Protein Alignment Caper and tiar-2

DIOPT Version :10

• Sequence 1: NP_609095.1
• Gene: Caper / 33989
• FlyBaseID: FBgn0031883
• Length: 594
• Species: Drosophila melanogaster
• Sequence 2: NP_496718.1
• Gene: tiar-2 / 174909
• WormBaseID: WBGene00012904
• Length: 434
• Species: Caenorhabditis elegans
• Alignment Length: 352
• Identity: 81/352 - (23%)
• Similarity: 138/352 - (39%)
• Gaps: 72/352 - (20%)

  Fly   228 ELSPEERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGI----AYIEFDDP 288
            :|:....|.||:|...|...:....|...|:.:|.|...::|       |:|:    |::||.|.
 Worm    31 QLASGSEDPRTLFVANLDPAITDEFLATLFNQIGAVMKAKII-------FEGLNDPYAFVEFSDH 88

  Fly   289 ESVALAL-GLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPK----SHTGP-----MRLYVGSLH 343
            ....||| ..:|:.||           ||.  .:...||:|:    :.:.|     ..::||.|.
 Worm    89 NQATLALQSHNGRELL-----------EKE--MHVTWAFEPREPGENRSKPETSRHFHVFVGDLC 140

  Fly   344 FNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKV 408
            ..|....||..|..||::...::|.|..|.:.|||||::|...:||::|::::||..|..|.::.
 Worm   141 SEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRT 205

  Fly   409 GNVTERLDMNTTSLDTDEMDRTGIDLGATGRLQLMFKLAEGAGLAVPQAAANALLATAPQPAPLQ 473
            ...|.:.| .......|..||.|  .|..||.:...:..:.......||||:.........|.|.
 Worm   206 NWATRKPD-EDGERGGDRGDRRG--GGGGGRDRYHNQSEKTYDEIFNQAAADNTSVYVGNIANLG 267

  Fly   474 QQEVAPSIATQCFILSNMFDPRTETNPTWDVEIRDDVLEECAKHGGVLHIHVDTISHTGTVYVKC 538
            :.|:..:.        :.|.|..|                           |.|....|..:||.
 Worm   268 EDEIRRAF--------DRFGPINE---------------------------VRTFKIQGYAFVKF 297

  Fly   539 PSTTTAVLAVNALHGRWFAGRVITAAY 565
            .:..:|..|:..::.....|:::..::
 Worm   298 ETKESAARAIVQMNNADIGGQIVRCSW 324

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Caper	NP_609095.1	SF-CC1	213..578	CDD:273721	81/352 (23%)
tiar-2	NP_496718.1	PABP-1234	41..>317	CDD:130689	77/333 (23%)
		RRM_SF	133..207	CDD:473069	25/73 (34%)
		RRM3_TIA1_like	256..325	CDD:409790	14/104 (13%)