DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab30 and Rab1a

DIOPT Version :9

Sequence 1:NP_001245926.1 Gene:Rab30 / 33988 FlyBaseID:FBgn0031882 Length:223 Species:Drosophila melanogaster
Sequence 2:NP_112352.2 Gene:Rab1a / 81754 RGDID:619736 Length:205 Species:Rattus norvegicus


Alignment Length:208 Identity:94/208 - (45%)
Similarity:136/208 - (65%) Gaps:10/208 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVEGEKIKLQIWDTAGQE 67
            :|.:|||::|:|::||||:||:.||....:.....:||||||.|:|:|::|:.||||||||||||
  Rat     7 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 71

  Fly    68 RFRSITQSYYRSAHALILVYDISCQPTFDCLPDWLREIQEYANSKVLKILVGNKTDRDDRE-IPT 131
            |||:||.||||.||.:|:|||::.|.:|:.:..||:||..||:..|.|:|||||.|...:: :..
  Rat    72 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDY 136

  Fly   132 QIGEEFAKQHDMYFLETSAKEAENVERLFYEIAAELIGQARSKDGSSSAAAAAAQRQSEGSSIGL 196
            ...:|||....:.|||||||.|.|||:.|..:|||:    :.:.|..:.|..|     |.|::.:
  Rat   137 TTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI----KKRMGPGATAGGA-----EKSNVKI 192

  Fly   197 GSFSAKAAQSNCC 209
            .|...|.:...||
  Rat   193 QSTPVKQSGGGCC 205

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab30NP_001245926.1 Rab30 1..168 CDD:133314 85/165 (52%)
Rab1aNP_112352.2 Rab1_Ypt1 10..175 CDD:206661 84/168 (50%)
Effector region. /evidence=ECO:0000255 40..48 4/7 (57%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 178..205 6/31 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1149105at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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