DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab30 and Rab11b

DIOPT Version :10

Sequence 1:NP_609094.1 Gene:Rab30 / 33988 FlyBaseID:FBgn0031882 Length:223 Species:Drosophila melanogaster
Sequence 2:NP_116006.1 Gene:Rab11b / 79434 RGDID:68369 Length:218 Species:Rattus norvegicus


Alignment Length:217 Identity:87/217 - (40%)
Similarity:138/217 - (63%) Gaps:10/217 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVEGEKIKLQIWDTAGQ 66
            ::|.:|||:||:|::||||:.|:.|||:..|.....:||||:|..::::|:|:.||.||||||||
  Rat     6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 70

  Fly    67 ERFRSITQSYYRSAHALILVYDISCQPTFDCLPDWLREIQEYANSKVLKILVGNKTD-RDDREIP 130
            ||:|:||.:|||.|...:|||||:...|::.:..||:|::::|:|.::.:|||||:| |..|.:|
  Rat    71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP 135

  Fly   131 TQIGEEFAKQHDMYFLETSAKEAENVERLFYEIAAELIGQARSKDGSSSAAAAAAQRQSEGS--- 192
            |.....||:::::.|:||||.::.|||..|..|..|:......|    ..|..||..:|.|:   
  Rat   136 TDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK----QIADRAAHDESPGNNVV 196

  Fly   193 --SIGLGSFSAKAAQSNCCGGL 212
              |:...:...|..:..||..|
  Rat   197 DISVPPTTDGQKPNKLQCCQNL 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab30NP_609094.1 Rab30 1..168 CDD:133314 76/166 (46%)
Rab11bNP_116006.1 Rab11_like 9..173 CDD:206660 75/163 (46%)
Switch 1. /evidence=ECO:0000250|UniProtKB:Q15907 36..47 4/10 (40%)
Switch 2. /evidence=ECO:0000250|UniProtKB:Q15907 67..86 13/18 (72%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 184..218 8/33 (24%)

Return to query results.
Submit another query.