DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab30 and Rab21

DIOPT Version :9

Sequence 1:NP_001245926.1 Gene:Rab30 / 33988 FlyBaseID:FBgn0031882 Length:223 Species:Drosophila melanogaster
Sequence 2:NP_001036321.2 Gene:Rab21 / 3355163 FlyBaseID:FBgn0039966 Length:222 Species:Drosophila melanogaster


Alignment Length:221 Identity:72/221 - (32%)
Similarity:114/221 - (51%) Gaps:31/221 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVE-GEKIKLQIWDTAGQERFRS 71
            ||.||:|...||||.||.|:.:..|.....:|:...|:.:.:.:| |.:.:|.||||||||||.:
  Fly    14 FKAVLLGEGCVGKTSLVLRYMEDRFNAQHLSTLQASFVSRKMSLEDGRRAQLNIWDTAGQERFHA 78

  Fly    72 ITQSYYRSAHALILVYDISCQPTFDCLPDWLREIQEYANSKVLKILVGNKTD-RDDREIPTQIGE 135
            :...|||.:...:|||||:.:.:|..:..|:||:::...:::..|:|||||| .:.|.:......
  Fly    79 LGPIYYRGSDGALLVYDITDRDSFQKVKSWVRELRQMRGTEIALIIVGNKTDLEEQRAVTHDEAL 143

  Fly   136 EFAKQHDMYFLETSAKEAENVERLFYEIAAELIGQARSKDGSSSAAAAAAQRQSEGSSIGLGSFS 200
            ::|:.....::||||||.|.|..|| |:..:|:.:..|            |||.:.|.:.|.:..
  Fly   144 QYARTVGAQYVETSAKENEGVAELF-ELLTQLMLEQLS------------QRQPDASPLRLQNPD 195

  Fly   201 A----------------KAAQSNCCG 210
            .                .|.|.:|||
  Fly   196 TDNLNNSDDSEAPDPGDPAGQRSCCG 221

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab30NP_001245926.1 Rab30 1..168 CDD:133314 60/161 (37%)
Rab21NP_001036321.2 Rab21 14..176 CDD:133323 61/162 (38%)
Ras 15..177 CDD:278499 60/162 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454548
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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