DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab30 and Rab35

DIOPT Version :10

Sequence 1:NP_609094.1 Gene:Rab30 / 33988 FlyBaseID:FBgn0031882 Length:223 Species:Drosophila melanogaster
Sequence 2:XP_063127282.1 Gene:Rab35 / 288700 RGDID:1306362 Length:204 Species:Rattus norvegicus


Alignment Length:197 Identity:87/197 - (44%)
Similarity:118/197 - (59%) Gaps:11/197 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 GNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVEGEKIKLQIWDTAGQERFRSITQSYYR 78
            |.|||||:.|:.||....|......||||||.|:|||:.|||:||||||||||||||:||.:|||
  Rat    18 GPAGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYR 82

  Fly    79 SAHALILVYDISCQPTFDCLPDWLREIQEYANSKVLKILVGNKTDRDDRE-IPTQIGEEFAKQHD 142
            ..|.:|:|||::...:|..:..||.||.:..:. |.:||||||.|..:|: :.|:...:||.|..
  Rat    83 GTHGVIVVYDVTSAESFVNVKRWLHEINQNCDD-VCRILVGNKNDDPERKVVETEDAYKFAGQMG 146

  Fly   143 MYFLETSAKEAENVERLFYEIAAELIGQARSKDGSSSAAAAAAQRQSEGSSIGLGSFSAKAAQSN 207
            :...||||||..|||.:| ....||:.:|: ||.     .|..|:|.:...:.|...|.:  :..
  Rat   147 IQLFETSAKENVNVEEMF-NCITELVLRAK-KDN-----LAKQQQQQQNDVVKLTKNSKR--KKR 202

  Fly   208 CC 209
            ||
  Rat   203 CC 204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab30NP_609094.1 Rab30 1..168 CDD:133314 76/154 (49%)
Rab35XP_063127282.1 None

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