DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pcp and Lcp65Af

DIOPT Version :9

Sequence 1:NP_476673.1 Gene:Pcp / 33985 FlyBaseID:FBgn0003046 Length:184 Species:Drosophila melanogaster
Sequence 2:NP_477274.1 Gene:Lcp65Af / 45017 FlyBaseID:FBgn0020639 Length:100 Species:Drosophila melanogaster


Alignment Length:116 Identity:39/116 - (33%)
Similarity:53/116 - (45%) Gaps:31/116 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MYLLVNFIV--ALAVLQVQAGSSYIPDSDRNTRTLQNDLQVERD---GKYRYAYETSNGISASQE 60
            |..|:.|:.  ||||..||.                  |:.|.|   ..:.|.||||:|.||...
  Fly     1 MKFLIVFVALFALAVADVQI------------------LKQESDVGPVSFNYGYETSDGSSAQAA 47

  Fly    61 G----LG----GVAVQGGSSYTSPEGEVISVNYVADEFGYHPVGAHIPQVP 103
            |    :|    .:.|:|..|:.:.:|:..|:.|.|||.||.|.|||:|..|
  Fly    48 GQLKNVGTDEEALNVKGTYSFVADDGQTYSIAYTADENGYQPQGAHLPVAP 98

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PcpNP_476673.1 Chitin_bind_4 45..92 CDD:278791 19/54 (35%)
Lcp65AfNP_477274.1 Chitin_bind_4 32..87 CDD:278791 19/54 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_2EQ63
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1459720at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10380
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.920

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