DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pcp and Lcp4

DIOPT Version :10

Sequence 1:NP_476673.1 Gene:Pcp / 33985 FlyBaseID:FBgn0003046 Length:184 Species:Drosophila melanogaster
Sequence 2:NP_476622.1 Gene:Lcp4 / 35820 FlyBaseID:FBgn0002535 Length:112 Species:Drosophila melanogaster


Alignment Length:118 Identity:39/118 - (33%)
Similarity:57/118 - (48%) Gaps:16/118 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 LLVNFIVALAVLQVQAGSSYIPDSDRNTRTLQNDLQVERDGKYRYAYETSNGISASQEGLGGVAV 67
            |||..:|||..          .:.:...:.|.||:|.  || :.......||.:||..|.....:
  Fly     5 LLVCALVALVA----------ANENPEVKELVNDVQA--DG-FVSKLVLDNGSAASATGDVHGNI 56

  Fly    68 QGGSSYTSPEGEVISVNYVADEFGYHPVGAHI---PQVPDYILRSLEYIRTHP 117
            .|...:.|||||.:.|:|.|||.||.|....:   |.:|:.||:::.||:.||
  Fly    57 DGVFEWVSPEGEHVRVSYKADENGYQPQSDLLPTPPPIPEAILKAIAYIQAHP 109

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PcpNP_476673.1 Chitin_bind_4 45..92 CDD:459790 16/46 (35%)
Lcp4NP_476622.1 Chitin_bind_4 40..81 CDD:459790 16/40 (40%)

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