DRSC/TRiP Functional Genomics Resources

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Protein Alignment snRNP-U1-70K and NAM8

DIOPT Version :10

Sequence 1:NP_477205.1 Gene:snRNP-U1-70K / 33982 FlyBaseID:FBgn0016978 Length:448 Species:Drosophila melanogaster
Sequence 2:NP_011954.1 Gene:NAM8 / 856486 SGDID:S000001128 Length:523 Species:Saccharomyces cerevisiae


Alignment Length:131 Identity:31/131 - (23%)
Similarity:49/131 - (37%) Gaps:37/131 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 NATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAA 159
            |.||.....|||.|. ..||.:|               ::|||.:|..|||.|:::.:..:...|
Yeast   173 NVTESQLFELFINRY-ASTSHAK---------------IVHDQVTGMSKGYGFVKFTNSDEQQLA 221

  Fly   160 YKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGGLGGTRR---GGNDVNIKHSGREDNERERER 221
            .....|..::.:.:.|                 |...|.::   |.||.| :.|...:||....|
Yeast   222 LSEMQGVFLNGRAIKV-----------------GPTSGQQQHVSGNNDYN-RSSSSLNNENVDSR 268

  Fly   222 Y 222
            :
Yeast   269 F 269

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snRNP-U1-70KNP_477205.1 U1snRNP70_N 3..92 CDD:432406
RRM_snRNP70 101..188 CDD:409682 18/86 (21%)
NAM8NP_011954.1 RRM1_NGR1_NAM8_like 55..144 CDD:410023
RRM2_SECp43_like 162..241 CDD:409781 22/100 (22%)
RRM3_NGR1_NAM8_like 312..383 CDD:409782
Blue background indicates that the domain is not in the aligned region.

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