DRSC/TRiP Functional Genomics Resources

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Protein Alignment snRNP-U1-70K and SNP1

DIOPT Version :9

Sequence 1:NP_001260173.1 Gene:snRNP-U1-70K / 33982 FlyBaseID:FBgn0016978 Length:448 Species:Drosophila melanogaster
Sequence 2:NP_012203.1 Gene:SNP1 / 854749 SGDID:S000001323 Length:300 Species:Saccharomyces cerevisiae


Alignment Length:316 Identity:100/316 - (31%)
Similarity:152/316 - (48%) Gaps:71/316 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTQYLPPNLLALFAAREPIPFMPPVDKLPHEKK--SRGYLGVAK--------FMADFEDPKDTPL 55
            :::| |.::..||..|.|:.:..|.| .|:.|:  :....|||.        :|.:|  |:.:| 
Yeast     5 LSKY-PDDVSRLFKPRPPLSYKRPTD-YPYAKRQTNPNITGVANLLSTSLKHYMEEF--PEGSP- 64

  Fly    56 PKTVETRQERLERRRREKAEQV--AYKLEREIALWDPT---EIKNATEDPFRTLFIARINYDTSE 115
                   ...|:|....|..::  |..|:|.:..|:|.   .||:.  ||:||:||.|:.||..|
Yeast    65 -------NNHLQRYEDIKLSKIKNAQLLDRRLQNWNPNVDPHIKDT--DPYRTIFIGRLPYDLDE 120

  Fly   116 SKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHAD---GKKIDSKRVLVDV 177
            .:|::.|..:|.|:||.::.|:.:.|.||||||.::.......|:|...   |.:|..:..:||:
Yeast   121 IELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMAFKEIGVHRGIQIKDRICIVDI 185

  Fly   178 ERARTVKGWLPRRLGGGLGGTRRGGNDVNIKHSGR-----EDNERERERY--RLERERE------ 229
            ||.||||.:.||||||||||  ||.::.:.:..||     ..|..|| .|  ||.| ||      
Yeast   186 ERGRTVKYFKPRRLGGGLGG--RGYSNRDSRLPGRFASASTSNPAER-NYAPRLPR-RETSSSAY 246

  Fly   230 --DREGPGRGGGSNGLDAR------------PGRGFGA--ERRRSRSRERRDRERD 269
              ||.      ||:.||||            |.....:  :.|.||:||.:...::
Yeast   247 SADRY------GSSTLDARYRGNRPLLSAATPTAAVTSVYKSRNSRTRESQPAPKE 296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snRNP-U1-70KNP_001260173.1 U1snRNP70_N 2..92 CDD:289024 25/104 (24%)
RRM <97..>179 CDD:223796 30/84 (36%)
RRM_snRNP70 101..188 CDD:240682 34/89 (38%)
SNP1NP_012203.1 U1snRNP70_N 6..95 CDD:403437 24/100 (24%)
RRM_SNP1_like 89..201 CDD:410194 44/113 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157346122
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 101 1.000 Inparanoid score I1450
Isobase 1 0.950 - 0 Normalized mean entropy S1470
OMA 1 1.010 - - QHG54339
OrthoFinder 1 1.000 - - FOG0005136
OrthoInspector 1 1.000 - - oto99581
orthoMCL 1 0.900 - - OOG6_102349
Panther 1 1.100 - - LDO PTHR13952
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1267
SonicParanoid 1 1.000 - - X3654
TreeFam 00.000 Not matched by this tool.
1211.880

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