Protein Alignment snRNP-U1-70K and RBP47C

DIOPT Version :10

• Sequence 1: NP_477205.1
• Gene: snRNP-U1-70K / 33982
• FlyBaseID: FBgn0016978
• Length: 448
• Species: Drosophila melanogaster
• Sequence 2: NP_175180.1
• Gene: RBP47C / 841157
• AraportID: AT1G47490
• Length: 432
• Species: Arabidopsis thaliana
• Alignment Length: 259
• Identity: 55/259 - (21%)
• Similarity: 101/259 - (38%)
• Gaps: 68/259 - (26%)

  Fly     6 PPNLL----ALFAAREPIPFMPPVDKLPH----EKKSRG---------------------YLGVA 41
            ||.::    .::|   |.|| ||..:.|:    ..:|||                     ::..|
plant    55 PPTVIIPHQMMYA---PPPF-PPYHQYPNHHHLHHQSRGNKHQNAFNGENKTIWVGDLHHWMDEA 115

  Fly    42 KFMADFE--DPKDTPLPKTVETRQERLERRR---REKAEQVAYKLEREIALWDPTEIKNATEDPF 101
            ...:.|.  |.::....|.:..:...|....   ..::..||.|:.||   ::.|.:.| |:.||
plant   116 YLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLRE---FNGTTMPN-TDQPF 176

  Fly   102 R--------------------TLFIARINYDTSESKLRREF-EFYGPIKKIVLIHDQESGKPKGY 145
            |                    ::|:..::.|.|::.|...| |.|..:|...::.|..:|:.|||
plant   177 RLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGY 241

  Fly   146 AFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGGLGG---TRRGGNDVN 206
            .|:.:..|.:...|....:|.|..|:.:.:.....|...|:  ::.||.:..   ||..|:.:|
plant   242 GFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGY--QQQGGYMPNGTLTRPEGDIMN 303

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snRNP-U1-70K	NP_477205.1	U1snRNP70_N	3..92	CDD:432406	22/119 (18%)
		RRM_snRNP70	101..188	CDD:409682	23/107 (21%)
RBP47C	NP_175180.1	RRM1_SECp43_like	102..184	CDD:409780	16/85 (19%)
		RRM2_SECp43_like	196..275	CDD:409781	19/78 (24%)
		RRM3_NGR1_NAM8_like	303..374	CDD:409782	1/1 (100%)