Protein Alignment snRNP-U1-70K and SC35

DIOPT Version :10

• Sequence 1: NP_477205.1
• Gene: snRNP-U1-70K / 33982
• FlyBaseID: FBgn0016978
• Length: 448
• Species: Drosophila melanogaster
• Sequence 2: NP_201225.1
• Gene: SC35 / 836541
• AraportID: AT5G64200
• Length: 303
• Species: Arabidopsis thaliana
• Alignment Length: 355
• Identity: 81/355 - (22%)
• Similarity: 125/355 - (35%)
• Gaps: 99/355 - (27%)

  Fly   103 TLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKK 167
            :|.:..|.:.|:...|...|..||.:..:.:..|:.:|..:|:||:.|:::.:.|.|.:..||:.
plant    17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRV 81

  Fly   168 IDSKRVLVDVERARTVKGWLPRRLGGGLGGTRRGGNDVNIKHSGREDNERERERYRLEREREDRE 232
            :|.:.:.|...                                                    :.
plant    82 VDGREITVQFA----------------------------------------------------KY 94

  Fly   233 GPGRGGGSNGLDARPGRGFGAERRRSRSRE-RRDRERDRGRGAVASNGRSRSRSRERRKRRAGSR 296
            ||.....|.|....|    ..:.||||||. ||.|...|.|.........||||..||     ||
plant    95 GPNAEKISKGRVVEP----PPKSRRSRSRSPRRSRSPRRSRSPPRRRSPRRSRSPRRR-----SR 150

  Fly   297 ERYDEFDRR--------DRRDRERERDRDREREKKKKRSKSRERESSRERRERKRERRDRERGTG 353
            :.|.|.|.|        |||:|..|:|||..|       ::|.|.:|.:.:.|.|.|.|.|..:.
plant   151 DDYREKDYRKRSRSRSYDRRERHEEKDRDHRR-------RTRSRSASPDEKRRVRGRYDNESRSH 208

  Fly   354 SGGDVKERKPDFRDMDVIKIKEEPVDDGYPTFDYQNATIKREIDDEDEEKYRPPPAHHNMFSVPP 418
            |           |.:.....:..|.... |    |..:..||:..:.....|.|....::  .|.
plant   209 S-----------RSLSASPARRSPRSSS-P----QKTSPAREVSPDKRSNERSPSPRRSL--SPR 255

  Fly   419 PPILGRGNASTNPNPDNGQQ----SSGDPS 444
            .|.|.:.:.|...:|:....    |.|.|:
plant   256 SPALQKASPSKEMSPERRSNERSPSPGSPA 285

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snRNP-U1-70K	NP_477205.1	U1snRNP70_N	3..92	CDD:432406
		RRM_snRNP70	101..188	CDD:409682	19/84 (23%)
SC35	NP_201225.1	RRM_SRSF2_SRSF8	18..90	CDD:409751	18/71 (25%)
		PHA03307	<204..>303	CDD:223039	18/100 (18%)