DRSC/TRiP Functional Genomics Resources

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Protein Alignment snRNP-U1-70K and AT5G54580

DIOPT Version :10

Sequence 1:NP_477205.1 Gene:snRNP-U1-70K / 33982 FlyBaseID:FBgn0016978 Length:448 Species:Drosophila melanogaster
Sequence 2:NP_200269.1 Gene:AT5G54580 / 835546 AraportID:AT5G54580 Length:156 Species:Arabidopsis thaliana


Alignment Length:83 Identity:22/83 - (26%)
Similarity:38/83 - (45%) Gaps:0/83 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 DPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHA 163
            :|...||::.::..|:...||..|..:|.:....::.|:.||..||:.|:.|....|........
plant    53 EPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGM 117

  Fly   164 DGKKIDSKRVLVDVERAR 181
            |||.:|...:..:..|.|
plant   118 DGKFLDGWVIFAEYARPR 135

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snRNP-U1-70KNP_477205.1 U1snRNP70_N 3..92 CDD:432406
RRM_snRNP70 101..188 CDD:409682 21/81 (26%)
AT5G54580NP_200269.1 RRM 55..138 CDD:440488 21/81 (26%)
Blue background indicates that the domain is not in the aligned region.

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