DRSC/TRiP Functional Genomics Resources

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Protein Alignment snRNP-U1-70K and RS40

DIOPT Version :10

Sequence 1:NP_477205.1 Gene:snRNP-U1-70K / 33982 FlyBaseID:FBgn0016978 Length:448 Species:Drosophila melanogaster
Sequence 2:NP_194280.1 Gene:RS40 / 828654 AraportID:AT4G25500 Length:350 Species:Arabidopsis thaliana


Alignment Length:384 Identity:107/384 - (27%)
Similarity:150/384 - (39%) Gaps:113/384 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 RTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGK 166
            :.:|.....||..|..|.|.|..||.::::    |.::    |:||:..|.|||...|.:..|..
plant     2 KPVFCGNFEYDAREGDLERLFRKYGKVERV----DMKA----GFAFVYMEDERDAEDAIRALDRF 58

  Fly   167 KIDSKRVLVDVERARTVKGWLPRRLGGGLGGTRRGGNDV-----------NIKHSGREDNERERE 220
            :...|...:.||..::.:|. .:|.|   ||:||..:.:           :..::...|.|:..|
plant    59 EFGRKGRRLRVEWTKSERGG-DKRSG---GGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFE 119

  Fly   221 RY------RLER-----EREDREGPGRG-GGSNGL----------------DARPGRGFGAERRR 257
            .|      |:.|     :.|.:|...|. ..||..                ||| |.|...||||
plant   120 PYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDAR-GNGHSPERRR 183

  Fly   258 SRSRERR-------DRER---DRGRGA--VAS---------NGRSRSRSRERRKRRAGSRERYDE 301
            .||.|||       .|||   |.||||  ||:         .||.||.|..::.|| ||.| |. 
plant   184 DRSPERRRRSPSPYKRERGSPDYGRGASPVAAYRKERTSPDYGRRRSPSPYKKSRR-GSPE-YG- 245

  Fly   302 FDRRDRRDRERERDRDREREKKK-KRSKSRERE-----SSRERRERKR----------ERRDRER 350
               ||||..:..|.|:|.....| .||.:.:||     .|..::|..|          |||:|.|
plant   246 ---RDRRGNDSPRRRERVASPTKYSRSPNNKRERMSPNHSPFKKESPRNGVGEVESPIERRERSR 307

  Fly   351 GTGSGGDVKERKPDFRDMDVIKIKEEPVDDGYPTFDYQNATIKREIDDEDEEKYRPPPA 409
            .:...|.|:  .|.       .|.....|.||   |...:.:::      ....|.|||
plant   308 SSPENGQVE--SPG-------SIGRRDSDGGY---DGAESPMQK------SRSPRSPPA 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snRNP-U1-70KNP_477205.1 U1snRNP70_N 3..92 CDD:432406
RRM_snRNP70 101..188 CDD:409682 23/85 (27%)
RS40NP_194280.1 RRM1_AtRSp31_like 2..73 CDD:409680 22/78 (28%)
RRM_SF 98..167 CDD:473069 11/68 (16%)
Blue background indicates that the domain is not in the aligned region.

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