Protein Alignment snRNP-U1-70K and CP29

DIOPT Version :10

• Sequence 1: NP_477205.1
• Gene: snRNP-U1-70K / 33982
• FlyBaseID: FBgn0016978
• Length: 448
• Species: Drosophila melanogaster
• Sequence 2: NP_001190079.1
• Gene: CP29 / 824514
• AraportID: AT3G53460
• Length: 363
• Species: Arabidopsis thaliana
• Alignment Length: 199
• Identity: 47/199 - (23%)
• Similarity: 79/199 - (39%)
• Gaps: 50/199 - (25%)

  Fly    89 DPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHE 153
            |...::..:..|...||:..::::...::|.:.||..|.::.:.:|:|:.:|:.:|:.|:.....
plant    86 DSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTA 150

  Fly   154 RDMHAAYKHADG---KKIDSK-------RVLVDVE---RARTVKGW--LPRR--------LGGGL 195
            .::.||.:..:|   :.:.|.       |||..:|   |...|...  .|:|        ..||.
plant   151 AEVEAAAQQFNGYVSRYLCSLLCLYLLIRVLCGLEFEGRPLRVNAGPPPPKREESFSRGPRSGGY 215

  Fly   196 GGTRRGGNDVNIKHSGREDNERERERYRLER------EREDREGPGRGGGSNGLDARPGRGFGAE 254
            |..|.||                   |..||      ||....|..||||..  ..|.|.|:|..
plant   216 GSERGGG-------------------YGSERGGGYGSERGGGYGSERGGGYG--SQRSGGGYGGS 259

  Fly   255 RRRS 258
            :|.|
plant   260 QRSS 263

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snRNP-U1-70K	NP_477205.1	U1snRNP70_N	3..92	CDD:432406	1/2 (50%)
		RRM_snRNP70	101..188	CDD:409682	21/101 (21%)
CP29	NP_001190079.1	U2AF_lg	<45..>144	CDD:273727	12/57 (21%)
		RRM_SF	100..199	CDD:473069	21/98 (21%)
		RRM	278..361	CDD:440488