DRSC/TRiP Functional Genomics Resources

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Protein Alignment snRNP-U1-70K and U1-70K

DIOPT Version :9

Sequence 1:NP_001260173.1 Gene:snRNP-U1-70K / 33982 FlyBaseID:FBgn0016978 Length:448 Species:Drosophila melanogaster
Sequence 2:NP_190636.1 Gene:U1-70K / 824230 AraportID:AT3G50670 Length:427 Species:Arabidopsis thaliana


Alignment Length:410 Identity:167/410 - (40%)
Similarity:228/410 - (55%) Gaps:45/410 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LPPNLLALFAAREPIPFMPPVDKLPHEKKSRGYLGVAKFMADFEDPKD----TPLPKTVETRQER 65
            |..|||.||..|.|:.:.||    |.::|...|.|:|:|:::|.:|.|    .|.|: ||...::
plant    42 LTNNLLKLFEPRPPLEYKPP----PEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPE-VELPSQK 101

  Fly    66 LERRRREKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKK 130
            .||..:.:.|:...|...::..:||....|||.||::|||::|:||::||||::||||.|||||:
plant   102 RERIHKLRLEKGVEKAAEDLKKYDPNN
DPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKR 166

  Fly   131 IVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGGL 195
            :.|:.||.:.||||||||||.|.|||.||||.|||:|||.:||||||||.|||..|.||||||||
plant   167 VHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPRRLGGGL 231

  Fly   196 GGTRRGGNDVNI---KHSGREDNERERERYRLEREREDREGPGRGGGSNGLDARPGRGFGAERRR 257
            |.:|.||.:..:   :..||.....|..|.|.|||:...:|..|.........:|       |.|
plant   232 GTSRVGGGEEIVGEQQPQGRTSQSEEPSRPREEREKSREKGKERERSRELSHEQP-------RER 289

  Fly   258 SRSRERRDR-ERDRGRGAVASNGRSRSRSRERRKRRAGSRERYDEFDRRDRRDRERERDRDRERE 321
            ||.|.|.|: .|||.:|       .|.|.|:.|:.|..:|:|.|    ||||||:|.||| ..|:
plant   290 SRDRPREDKHHRDRDQG-------GRDRDRDSRRDRDRTRDRGD----RDRRDRDRGRDR-TSRD 342

  Fly   322 KKKKRSKSRERESSRERRERKRERRDRERGTGSGGDVKERKPDFRDMDVIKIKEEPVDDGYPTFD 386
            ..:.||:.:||:......|.:...|.|||.....|:.:|.:..:.|           |.| .|..
plant   343 HDRDRSRKKERDYEGGEYEHEGGGRSRERDAEYRGEPEETRGYYED-----------DQG-DTDR 395

  Fly   387 YQNATIKREIDD-EDEEKYR 405
            |.:...|.|.|| ..|.:|:
plant   396 YSHRYDKMEEDDFRYEREYK 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snRNP-U1-70KNP_001260173.1 U1snRNP70_N 2..92 CDD:289024 29/90 (32%)
RRM <97..>179 CDD:223796 55/81 (68%)
RRM_snRNP70 101..188 CDD:240682 58/86 (67%)
U1-70KNP_190636.1 U1snRNP70_N 40..128 CDD:403437 29/90 (32%)
RRM_snRNP70 137..227 CDD:409682 60/89 (67%)
PRK12678 245..>395 CDD:237171 56/180 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 106 1.000 Domainoid score I2194
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 261 1.000 Inparanoid score I971
OMA 1 1.010 - - QHG54339
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005136
OrthoInspector 1 1.000 - - oto3144
orthoMCL 1 0.900 - - OOG6_102349
Panther 1 1.100 - - LDO PTHR13952
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3654
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
109.970

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