Protein Alignment snRNP-U1-70K and U1-70K

DIOPT Version :10

• Sequence 1: NP_477205.1
• Gene: snRNP-U1-70K / 33982
• FlyBaseID: FBgn0016978
• Length: 448
• Species: Drosophila melanogaster
• Sequence 2: NP_190636.1
• Gene: U1-70K / 824230
• AraportID: AT3G50670
• Length: 427
• Species: Arabidopsis thaliana
• Alignment Length: 410
• Identity: 167/410 - (40%)
• Similarity: 228/410 - (55%)
• Gaps: 45/410 - (10%)

  Fly     5 LPPNLLALFAAREPIPFMPPVDKLPHEKKSRGYLGVAKFMADFEDPKD----TPLPKTVETRQER 65
            |..|||.||..|.|:.:.||    |.::|...|.|:|:|:::|.:|.|    .|.|: ||...::
plant    42 LTNNLLKLFEPRPPLEYKPP----PEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPE-VELPSQK 101

  Fly    66 LERRRREKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKK 130
            .||..:.:.|:...|...::..:||....|||.||::|||::|:||::||||::||||.|||||:
plant   102 RERIHKLRLEKGVEKAAEDLKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKR 166

  Fly   131 IVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGGL 195
            :.|:.||.:.||||||||||.|.|||.||||.|||:|||.:||||||||.|||..|.||||||||
plant   167 VHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPRRLGGGL 231

  Fly   196 GGTRRGGNDVNI---KHSGREDNERERERYRLEREREDREGPGRGGGSNGLDARPGRGFGAERRR 257
            |.:|.||.:..:   :..||.....|..|.|.|||:...:|..|.........:|       |.|
plant   232 GTSRVGGGEEIVGEQQPQGRTSQSEEPSRPREEREKSREKGKERERSRELSHEQP-------RER 289

  Fly   258 SRSRERRDR-ERDRGRGAVASNGRSRSRSRERRKRRAGSRERYDEFDRRDRRDRERERDRDRERE 321
            ||.|.|.|: .|||.:|       .|.|.|:.|:.|..:|:|.|    ||||||:|.||| ..|:
plant   290 SRDRPREDKHHRDRDQG-------GRDRDRDSRRDRDRTRDRGD----RDRRDRDRGRDR-TSRD 342

  Fly   322 KKKKRSKSRERESSRERRERKRERRDRERGTGSGGDVKERKPDFRDMDVIKIKEEPVDDGYPTFD 386
            ..:.||:.:||:......|.:...|.|||.....|:.:|.:..:.|           |.| .|..
plant   343 HDRDRSRKKERDYEGGEYEHEGGGRSRERDAEYRGEPEETRGYYED-----------DQG-DTDR 395

  Fly   387 YQNATIKREIDD-EDEEKYR 405
            |.:...|.|.|| ..|.:|:
plant   396 YSHRYDKMEEDDFRYEREYK 415

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snRNP-U1-70K	NP_477205.1	U1snRNP70_N	3..92	CDD:432406	29/90 (32%)
		RRM_snRNP70	101..188	CDD:409682	58/86 (67%)
U1-70K	NP_190636.1	U1snRNP70_N	40..129	CDD:432406	29/91 (32%)
		RRM_snRNP70	137..227	CDD:409682	60/89 (67%)
		PRK12678	245..>395	CDD:237171	56/180 (31%)