Protein Alignment snRNP-U1-70K and AT2G21440

DIOPT Version :10

• Sequence 1: NP_477205.1
• Gene: snRNP-U1-70K / 33982
• FlyBaseID: FBgn0016978
• Length: 448
• Species: Drosophila melanogaster
• Sequence 2: NP_565513.1
• Gene: AT2G21440 / 816683
• AraportID: AT2G21440
• Length: 1003
• Species: Arabidopsis thaliana
• Alignment Length: 568
• Identity: 108/568 - (19%)
• Similarity: 197/568 - (34%)
• Gaps: 218/568 - (38%)

  Fly    46 DFEDPKD------------------TPLPKTVETRQERL---------------ERRRREKAEQV 77
            :|||..|                  ||..:|.|:.:.:|               |..:..|.:.|
plant   484 NFEDEADVARKVLKNLLASSKGSTATPEGETEESDKSKLKSSSTKPVADSSGVSEPLKSGKTKVV 548

  Fly    78 AYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKP 142
            |           |.|.:: .:|..|||||..:.:|.::.::::.|..:|.::.:.|:..:.:.:|
plant   549 A-----------PKETQD-NDDFERTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRP 601

  Fly   143 KGYAFIEYEHERDMHAAYKHAD---GKKIDSKRVLVDVERARTVKGWLPRRLGGGLGGTRRGGND 204
            :|.||::::......||...||   |..:..|...::|.||              :|  ::...|
plant   602 EGTAFVKFKTADASVAAISAADTASGVGVLLKGRQLNVMRA--------------VG--KKAAKD 650

  Fly   205 VNIKHSGREDNERERERYRLERERE--DREGPGRGGGSNGLDAR-----------PGRGFGAERR 256
            :.:|.: .|.|...|..| |.:|.:  |......|..:..:|.|           ....|...|.
plant   651 IELKKT-EEKNVDHRNLY-LAKEGQILDDTPAAEGVSAEDMDKRRRLHENKMKMLQSPNFHVSRT 713

  Fly   257 R------------------------SRSRERRDRER------DRGRGAVASNGRSRS-------- 283
            |                        ||:.:::...|      :..:|.|.:...||.
plant   714 RLVIYNLPKSMNPKQLNRLLVDAVTSRATKQKPCIRQIKFLQNEKKGKVDTKNYSRGVAFVEFTE 778

  Fly   284 ------------------------------------RSRERRKRRAGSRERYDEFDRRDR----- 307
                                                :.||.::::...||:::|.|::..
plant   779 HEHALVALRVLNNNPETFGPQHRPVIEFAVDNVQKLKIREAKQQQFQQREKHNESDQQQANGEAQ 843

  Fly   308 ------RDRERERDRDREREKKKKRSKSRERESSRER-----------RERKRERRDRERGTGS- 354
                  :.:.||.|....|::...|.|...||.|:|.           .|:||..|.:|:.:.:
plant   844 APDNKYKRKTREGDNTGPRKENAARFKKGPREESKEEAKSNIAVKDNAAEKKRPIRTQEKPSSNK 908

  Fly   355 -GGDVKER----KPD---FRDMDVIKIKEEPVDDGYPTFDYQNATIKR----------EIDDEDE 401
             |..::::    |||   .:|:...:.::...|.|.   :.:|...||          |:.|:.:
plant   909 KGQLMRQKETTEKPDPKISKDLSEPRKRKFGEDRGE---ENRNGQRKRKKQGQGQGGAEVVDKLD 970

  Fly   402 ---EKYRPPPAHHNMFSVPPPPILGRGNASTNPNPDNGQQSSGDPSWW 446
               ||||      :.||        :.:|.|.|.    :||||....|
plant   971 LLIEKYR------SKFS--------QSSAKTGPQ----KQSSGQVRRW 1000

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snRNP-U1-70K	NP_477205.1	U1snRNP70_N	3..92	CDD:432406	14/78 (18%)
		RRM_snRNP70	101..188	CDD:409682	22/89 (25%)
AT2G21440	NP_565513.1	RRM1_RBM28_like	21..99	CDD:409847
		ELAV_HUD_SF	24..411	CDD:273741
		RRM2_RBM28_like	332..408	CDD:409848
		RRM3_RBM28_like	561..642	CDD:409849	20/80 (25%)
		RRM4_RBM28_like	713..810	CDD:409850	8/96 (8%)
		PTZ00121	<813..>968	CDD:173412	32/157 (20%)