DRSC/TRiP Functional Genomics Resources

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Protein Alignment snRNP-U1-70K and hnrnpab

DIOPT Version :10

Sequence 1:NP_477205.1 Gene:snRNP-U1-70K / 33982 FlyBaseID:FBgn0016978 Length:448 Species:Drosophila melanogaster
Sequence 2:XP_012814656.1 Gene:hnrnpab / 734098 XenbaseID:XB-GENE-6042555 Length:326 Species:Xenopus tropicalis


Alignment Length:229 Identity:53/229 - (23%)
Similarity:92/229 - (40%) Gaps:51/229 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 PHEKKSRGYLGVAKFMADFEDPKD-TPLPKTVETRQERLERRRREKAEQVAYKLEREIALWDPTE 92
            |:..:|||: |...|       || ..:.|.:|.::.||:.|                 |.||.:
 Frog   100 PNTGRSRGF-GFILF-------KDAASVDKVLEQKEHRLDGR-----------------LIDPKK 139

  Fly    93 IKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHE---- 153
            .....:||.:.:|:..:|.:..|.|:|..||.:|.|:.|.|..|.::.|.:|:.||.::.|    
 Frog   140 AMAMKKDPIKKIFVGGLNPEAGEDKIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVK 204

  Fly   154 RDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGGLGGTRRGGNDVNIKHSGREDNERE 218
            :.:...:.:..|.|.:.|     :.:.:.|........||..||  |||      ..|:...:..
 Frog   205 KILEKKFHNVSGSKCEIK-----IAQPKEVYQQQYGGRGGSFGG--RGG------RGGKAQGQNW 256

  Fly   219 RERYRLEREREDREGPGRGGGSNGLDARPGRGFG 252
            .:.|        .....:|.|:.|......:|:|
 Frog   257 NQGY--------NSYWNQGYGNQGYGGYGQQGYG 282

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snRNP-U1-70KNP_477205.1 U1snRNP70_N 3..92 CDD:432406 16/63 (25%)
RRM_snRNP70 101..188 CDD:409682 21/90 (23%)
hnrnpabXP_012814656.1 CBFNT 1..52 CDD:311868
RRM1_hnRNPAB 61..140 CDD:410151 16/64 (25%)
RRM2_hnRNPAB 145..224 CDD:409997 22/83 (27%)
Blue background indicates that the domain is not in the aligned region.

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