DRSC/TRiP Functional Genomics Resources

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Protein Alignment snRNP-U1-70K and TIA1

DIOPT Version :10

Sequence 1:NP_477205.1 Gene:snRNP-U1-70K / 33982 FlyBaseID:FBgn0016978 Length:448 Species:Drosophila melanogaster
Sequence 2:NP_071505.2 Gene:TIA1 / 7072 HGNCID:11802 Length:386 Species:Homo sapiens


Alignment Length:75 Identity:23/75 - (30%)
Similarity:38/75 - (50%) Gaps:2/75 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 RTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGK 166
            :||::..::.|.:|:.:.:.|...||.|...:|.|.....|  |.|:|:...|...||....:|:
Human     7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALAAMNGR 69

  Fly   167 KIDSKRVLVD 176
            ||..|.|.|:
Human    70 KIMGKEVKVN 79

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snRNP-U1-70KNP_477205.1 U1snRNP70_N 3..92 CDD:432406
RRM_snRNP70 101..188 CDD:409682 23/75 (31%)
TIA1NP_071505.2 RRM1_TIA1 8..81 CDD:410027 23/74 (31%)
RRM2_TIA1 104..181 CDD:410030
RRM3_TIAR 214..286 CDD:241064
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 354..386
Blue background indicates that the domain is not in the aligned region.

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