Protein Alignment snRNP-U1-70K and Cstf2

DIOPT Version :9

• Sequence 1: NP_001260173.1
• Gene: snRNP-U1-70K / 33982
• FlyBaseID: FBgn0016978
• Length: 448
• Species: Drosophila melanogaster
• Sequence 2: XP_038955991.1
• Gene: Cstf2 / 683927
• RGDID: 1596566
• Length: 624
• Species: Rattus norvegicus
• Alignment Length: 106
• Identity: 33/106 - (31%)
• Similarity: 58/106 - (54%)
• Gaps: 6/106 - (5%)

  Fly    89 DPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHE 153
            ||     |.:...|::|:..|.|:.:|.:|:..|...||:....|::|:|:||||||.|.||:.:
  Rat     8 DP-----AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67

  Fly   154 RDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGG 194
            ....:|.::.:|::...:.:.||...:...|..| :.||.|
  Rat    68 ETALSAMRNLNGREFSGRALRVDNAASEKNKEEL-KSLGTG 107

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snRNP-U1-70K	NP_001260173.1	U1snRNP70_N	2..92	CDD:289024	2/2 (100%)
		RRM	<97..>179	CDD:223796	25/81 (31%)
		RRM_snRNP70	101..188	CDD:240682	26/86 (30%)
Cstf2	XP_038955991.1	RRM_CSTF2_CSTF2T	10..94	CDD:410072	26/83 (31%)
		CSTF2_hinge	112..191	CDD:405077
		PRK14718	<444..>501	CDD:173181
		CSTF_C	580..620	CDD:405061

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1455080at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.920