DRSC/TRiP Functional Genomics Resources

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Protein Alignment snRNP-U1-70K and rbmx2

DIOPT Version :10

Sequence 1:NP_477205.1 Gene:snRNP-U1-70K / 33982 FlyBaseID:FBgn0016978 Length:448 Species:Drosophila melanogaster
Sequence 2:NP_001020337.2 Gene:rbmx2 / 553240 ZFINID:ZDB-GENE-050626-88 Length:450 Species:Danio rerio


Alignment Length:439 Identity:112/439 - (25%)
Similarity:179/439 - (40%) Gaps:107/439 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 PLPKTVETRQERLERRRREKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKL 118
            ||.|.      :|.....|:..|:..|   |...|. :..||:.     .:||....|:.:|..:
Zfish     3 PLTKV------KLINELNEREAQLGIK---ETVSWH-SVYKNSA-----WVFIGGFPYELTEGDI 52

  Fly   119 RREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLV-------- 175
            ...|..||.|..|.|:.|:::||.||:.|:.||.:|....|..:.:|.||..:.:.|        
Zfish    53 ICVFSQYGEIANINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVANYRP 117

  Fly   176 --------DVERARTVKGWLPRRLGGGLGGTRRGGND--VNIKHSGREDNERERERYRLERER-- 228
                    |:.:....:|..|:.:.   ........:  |.:|...::..|:::::...:.::  
Zfish   118 PKDTDDIDDITKQLREEGCAPKPVS---SSEEESAEEYAVPVKKPKKDKKEKKKKKKEKKEKKKA 179

  Fly   229 ---EDREGPGRGGGSNGLDARPG-----------RGFGAERR---------RSRSRER------- 263
               |.|||......|:.:..:..           :|..|.||         :.:.|||       
Zfish   180 LKEEKREGRSESSASSPIRVKKEKEDVAYEKYSVKGPAANRRDRADEQEQLKEKEREREEGKKTD 244

  Fly   264 ----------RDRERDRGRGAVASNGRSRSRSRERRKRRAGSRERYDEFDR---RD---RRDRER 312
                      ||||.:|.........|.|.|..||::.|.|.|:|..|.||   ||   :||.||
Zfish   245 RRHAETQQRERDREGEREGDKERERDRGRQRDGERQRERDGGRQRDGERDRERERDGGRQRDGER 309

  Fly   313 ERDRDREREKKKKRSKSRERESSRER---RERKRER---------RDRERGTGSG------GDVK 359
            :|:||..|::..:|.:.|||:..|:|   |:|::||         |||||....|      .|.:
Zfish   310 QRERDGGRQRDGERDRERERDGGRQRDGDRDREQERDGGRQRDVERDRERERDGGRQRDGDRDQE 374

  Fly   360 ERKPDFRDMDVIKIKEEPVDDGYPTFDYQNATIKREID---DEDEEKYR 405
            :.:...|..||.|:||...|.|......::.  :||.|   ..|||:.|
Zfish   375 QERDGGRQRDVEKVKERERDGGRQRDGERDR--ERERDGGRQRDEERVR 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snRNP-U1-70KNP_477205.1 U1snRNP70_N 3..92 CDD:432406 9/37 (24%)
RRM_snRNP70 101..188 CDD:409682 26/102 (25%)
rbmx2NP_001020337.2 None

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