Protein Alignment snRNP-U1-70K and rnps1

DIOPT Version :10

• Sequence 1: NP_477205.1
• Gene: snRNP-U1-70K / 33982
• FlyBaseID: FBgn0016978
• Length: 448
• Species: Drosophila melanogaster
• Sequence 2: NP_001015956.1
• Gene: rnps1 / 548710
• XenbaseID: XB-GENE-941526
• Length: 284
• Species: Xenopus tropicalis
• Alignment Length: 243
• Identity: 60/243 - (24%)
• Similarity: 86/243 - (35%)
• Gaps: 65/243 - (26%)

  Fly    53 TPLPKTVETRQERLERRRREKAEQVAYKLEREIALWDPTEIKNATEDPFRT-LFIARINYDTSES 116
            :|.|.     :.|.:.|||.:::....|.       |..|.|..:..|..| :.|.|:..:.::.
 Frog   101 SPSPS-----RRRHDNRRRSRSKSKQPKR-------DEKERKRRSPSPRPTKVHIGRLTRNVTKD 153

  Fly   117 KLRREFEFYGPIKKIVLIHDQ-ESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERA 180
            .:...|..||.||.|.:..|: .....||||::|:|...:...|.||.||.:||.:    ::..:
 Frog   154 HILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALKHMDGGQIDGQ----EITAS 214

  Fly   181 RTVKGW----LPRRLGGGLGGTRRGGNDVNIKHSGREDNERERERYRLEREREDREGPGRGGGSN 241
            ..:..|    :|||.                          ...|..|......|..|.|
 Frog   215 AVLTPWPMRAMPRRF--------------------------SPPRRMLPPPPMWRRSPPR----- 248

  Fly   242 GLDARPGRGFGAERRRSRSRERRDRERDRGRGAVASNGRSRSRSRERR 289
                        .||||||..||...|.|.|.......||||.|...|
 Frog   249 ------------MRRRSRSPRRRSPVRRRSRSPARRRHRSRSSSNSSR 284

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snRNP-U1-70K	NP_477205.1	U1snRNP70_N	3..92	CDD:432406	8/38 (21%)
		RRM_snRNP70	101..188	CDD:409682	24/92 (26%)
rnps1	NP_001015956.1	RRM_RNPS1	141..214	CDD:409800	22/76 (29%)