Protein Alignment snRNP-U1-70K and Tra2a

DIOPT Version :10

• Sequence 1: NP_477205.1
• Gene: snRNP-U1-70K / 33982
• FlyBaseID: FBgn0016978
• Length: 448
• Species: Drosophila melanogaster
• Sequence 2: NP_001119768.2
• Gene: Tra2a / 500116
• RGDID: 1562563
• Length: 282
• Species: Rattus norvegicus
• Alignment Length: 232
• Identity: 65/232 - (28%)
• Similarity: 94/232 - (40%)
• Gaps: 47/232 - (20%)

  Fly    68 RRRREKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIV 132
            ||||.::........|...       ..|..||...|.:..::..|:|..||..|..|||:..:.
  Rat    90 RRRRSRSHSPMSNRRRHTG-------SRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVN 147

  Fly   133 LIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVD---VERARTVKGWL----PRR 190
            :::||.:|:.:|:||:.:|...|...|.:.|:|.::|.:|:.||   .:||.|....:    |..
  Rat   148 VVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTH 212

  Fly   191 LGGGLGGTRRGGNDVNIKHSGREDNERERERYRLEREREDREGPGRGGGSNGLDARPGRGFGAER 255
            .|||.||...||.                               |.|||....|:...||:  :|
  Rat   213 SGGGGGGGGGGGG-------------------------------GGGGGGRRRDSYYDRGY--DR 244

  Fly   256 RRSRSRERRDRERDRGRGAVASNGRSRSRSRERRKRR 292
            ...|..:...|.|.|......|..|||||||....||
  Rat   245 GYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSYSPRR 281

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snRNP-U1-70K	NP_477205.1	U1snRNP70_N	3..92	CDD:432406	5/23 (22%)
		RRM_snRNP70	101..188	CDD:409682	27/93 (29%)
Tra2a	NP_001119768.2	RRM_TRA2	116..195	CDD:409798	24/78 (31%)