Protein Alignment snRNP-U1-70K and srsf5

DIOPT Version :10

• Sequence 1: NP_477205.1
• Gene: snRNP-U1-70K / 33982
• FlyBaseID: FBgn0016978
• Length: 448
• Species: Drosophila melanogaster
• Sequence 2: NP_001004783.1
• Gene: srsf5 / 448003
• XenbaseID: XB-GENE-487049
• Length: 272
• Species: Xenopus tropicalis
• Alignment Length: 294
• Identity: 75/294 - (25%)
• Similarity: 108/294 - (36%)
• Gaps: 85/294 - (28%)

  Fly   104 LFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKI 168
            :||.|:|....|..:.|.|:.||.|:.|.|        .:|:.|:|::..||...|....|||::
 Frog     6 VFIGRLNPAAREKDVERFFKGYGRIRDIDL--------KRGFGFVEFDDPRDADDAVYELDGKEL 62

  Fly   169 DSKRVLVDVERARTVKGWLPRRLGGGLGGTRRGGNDVNIKHSGREDNERERERYRLEREREDREG 233
            .::||.::..|.|:..|  ||.||.|                      |..:|:...|.|.||..
 Frog    63 CNERVTIEHARLRSRGG--PRGLGRG----------------------RYNDRFSSRRPRGDRSA 103

  Fly   234 PG-------------------------RGGG-------------------------SNGLDARPG 248
            |.                         |..|                         .|.::...|
 Frog   104 PPIRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYSDLKNAIEKLSG 168

  Fly   249 RGF-GAERRRSRSRERRDRERDRGRGAVASNGRSRSRSRERRKRRAGSRERYDEFDRRDRRDRER 312
            :.. |.:.:.....:|..|.|.|.|....|:.|||||||. |.|::.||.|......|..|.:.|
 Frog   169 KEINGRKIKLIEGNKRHSRSRSRSRSRSRSSSRSRSRSRS-RSRKSYSRSRSRSRTPRSNRSKSR 232

  Fly   313 ERDRDREREK-KKKRSKSRERESSRERRERKRER 345
            ...|....|| :|.||.|:...|...::.|.|.|
 Frog   233 SVSRSPVPEKSQKSRSPSKSPASVDRQKSRSRSR 266

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snRNP-U1-70K	NP_477205.1	U1snRNP70_N	3..92	CDD:432406
		RRM_snRNP70	101..188	CDD:409682	26/83 (31%)
srsf5	NP_001004783.1	RRM1_SRSF5	5..73	CDD:410008	23/74 (31%)
		RRM2_SRSF5	101..181	CDD:410158	7/79 (9%)