DRSC/TRiP Functional Genomics Resources

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Protein Alignment snRNP-U1-70K and hnrnpabb

DIOPT Version :10

Sequence 1:NP_477205.1 Gene:snRNP-U1-70K / 33982 FlyBaseID:FBgn0016978 Length:448 Species:Drosophila melanogaster
Sequence 2:NP_998467.1 Gene:hnrnpabb / 406594 ZFINID:ZDB-GENE-040426-2516 Length:309 Species:Danio rerio


Alignment Length:245 Identity:49/245 - (20%)
Similarity:88/245 - (35%) Gaps:93/245 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 KSRGYLGVAKFMADFEDPKDTPLPKTVETRQERLERRRREKAEQVAYKLEREIALWDPTEIKNAT 97
            :|||: |...|      .:...:.:.::.::.||:.|:.:....:|.|                 
Zfish    84 RSRGF-GFILF------KESDSVDRVLQQKEHRLDGRQIDPKRAMAIK----------------- 124

  Fly    98 EDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHE----RDMHA 158
            ::|.:.:|:..:|.:|:|.|:|..|..:|.|:.|.|..|.::.|.:|:.||.::.|    :.:..
Zfish   125 KEPVKKIFVGGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKILEK 189

  Fly   159 AYKHADGKKIDSKRVLVDVERARTVKGWLPRRL---------GGGLGGTRRGGNDVNIKHSGRED 214
            .|.:..|.|.:             :|...|:.:         |||.||..||             
Zfish   190 KYHNVCGSKCE-------------IKIAQPKEIYQQQQFGARGGGFGGRGRG------------- 228

  Fly   215 NERERERYRLEREREDREGPGR--------------GGGSNGLDARPGRG 250
                            |.|||:              ||...|...:.|.|
Zfish   229 ----------------RGGPGQSWNQGYNNYWNQGYGGQGYGYGGQQGYG 262

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snRNP-U1-70KNP_477205.1 U1snRNP70_N 3..92 CDD:432406 10/58 (17%)
RRM_snRNP70 101..188 CDD:409682 21/90 (23%)
hnrnpabbNP_998467.1 CBFNT 2..45 CDD:311868
RRM1_hnRNPAB 41..120 CDD:410151 8/42 (19%)
RRM_SF 125..204 CDD:473069 22/91 (24%)
Blue background indicates that the domain is not in the aligned region.

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