DRSC/TRiP Functional Genomics Resources

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Protein Alignment snRNP-U1-70K and tia1

DIOPT Version :9

Sequence 1:NP_001260173.1 Gene:snRNP-U1-70K / 33982 FlyBaseID:FBgn0016978 Length:448 Species:Drosophila melanogaster
Sequence 2:XP_012814227.2 Gene:tia1 / 394890 XenbaseID:XB-GENE-1002876 Length:389 Species:Xenopus tropicalis


Alignment Length:79 Identity:25/79 - (31%)
Similarity:39/79 - (49%) Gaps:2/79 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 EDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKH 162
            ||..|||::..::.|.:|..:.:.|...||.|...:|.|.....|  |.|:|:...|...|:...
 Frog     3 EDLPRTLYVGNLSRDVTEPLILQVFSQLGPCKSCKMIMDTAGNDP--YCFVEFFEHRHAAASLAA 65

  Fly   163 ADGKKIDSKRVLVD 176
            .:|:||..|.|.|:
 Frog    66 MNGRKIMGKEVKVN 79

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snRNP-U1-70KNP_001260173.1 U1snRNP70_N 2..92 CDD:289024
RRM <97..>179 CDD:223796 25/79 (32%)
RRM_snRNP70 101..188 CDD:240682 23/76 (30%)
tia1XP_012814227.2 RRM1_TIA1 8..81 CDD:410027 22/74 (30%)
RRM2_TIA1 104..181 CDD:410030
RRM3_TIAR 214..286 CDD:241064
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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