Protein Alignment snRNP-U1-70K and tra2b

DIOPT Version :10

• Sequence 1: NP_477205.1
• Gene: snRNP-U1-70K / 33982
• FlyBaseID: FBgn0016978
• Length: 448
• Species: Drosophila melanogaster
• Sequence 2: NP_957491.1
• Gene: tra2b / 394172
• ZFINID: ZDB-GENE-040426-1094
• Length: 278
• Species: Danio rerio
• Alignment Length: 239
• Identity: 63/239 - (26%)
• Similarity: 98/239 - (41%)
• Gaps: 52/239 - (21%)

  Fly    61 TRQERLERRRREKAEQVAYKLEREIALWDPTEIKN--------ATEDPFRTLFIARINYDTSESK 117
            :|.....||||.::...:.:..|..:....:.:.|        |..||...|.:..::..|:|..
Zfish    74 SRSRSYSRRRRSRSRSYSSEYHRRRSSHSHSPMSNRRRHIGDRANPDPNCCLGVFGLSLYTTERD 138

  Fly   118 LRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERART 182
            ||..|..|||:..:.:::||:|.:.:|:|.:.:|:..|...|.:.|:|.::|.:|:.||..   .
Zfish   139 LREVFSKYGPLSDVCIVYDQQSRRSRGFALVYFENREDSKEAKERANGMELDGRRIRVDYS---I 200

  Fly   183 VKGWLPRRLGGGL---GGTRRGGNDVNIKHSGREDNERERERYRLEREREDREGPGRGGGSNGLD 244
            .||  |.....|:   ..|..||..|:          |.|:.|       ||      |...|.|
Zfish   201 TKG--PHTPTPGIYMGRPTYGGGPSVS----------RRRDSY-------DR------GYERGYD 240

  Fly   245 ARPGRGFGAERRRSRSRERRDRERDRGRGAVASNGRSRSRSRER 288
            :...|.:...||||.|             ...|.|..|||||.|
Zfish   241 SYEDRDYHNNRRRSPS-------------PYYSRGPYRSRSRSR 271

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snRNP-U1-70K	NP_477205.1	U1snRNP70_N	3..92	CDD:432406	6/30 (20%)
		RRM_snRNP70	101..188	CDD:409682	25/86 (29%)
tra2b	NP_957491.1	SF-CC1	23..>199	CDD:273721	33/124 (27%)
		RRM_TRA2B	116..202	CDD:410046	26/88 (30%)