DRSC/TRiP Functional Genomics Resources

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Protein Alignment snRNP-U1-70K and tial1

DIOPT Version :10

Sequence 1:NP_477205.1 Gene:snRNP-U1-70K / 33982 FlyBaseID:FBgn0016978 Length:448 Species:Drosophila melanogaster
Sequence 2:XP_005156854.1 Gene:tial1 / 394107 ZFINID:ZDB-GENE-040426-1547 Length:399 Species:Danio rerio


Alignment Length:92 Identity:24/92 - (26%)
Similarity:40/92 - (43%) Gaps:17/92 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 RTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPK-----------------GYAFIE 149
            :||::..::.|.:|:.:.:.|...||.|...:|.:|.....|                 .|.|:|
Zfish     8 KTLYVGNLSRDVTENLILQLFTQIGPCKSCKMITEQSDSSRKMNSSSIGFSVLQHTSNDPYCFVE 72

  Fly   150 YEHERDMHAAYKHADGKKIDSKRVLVD 176
            :...||..||....:|:||..|.|.|:
Zfish    73 FFEHRDAAAALAAMNGRKILGKEVKVN 99

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snRNP-U1-70KNP_477205.1 U1snRNP70_N 3..92 CDD:432406
RRM_snRNP70 101..188 CDD:409682 24/92 (26%)
tial1XP_005156854.1 RRM_SF 9..108 CDD:473069 24/91 (26%)
RRM2_TIAR 114..203 CDD:410029
RRM3_TIAR 233..305 CDD:241064
Blue background indicates that the domain is not in the aligned region.

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