DRSC/TRiP Functional Genomics Resources

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Protein Alignment snRNP-U1-70K and srsf10b

DIOPT Version :10

Sequence 1:NP_477205.1 Gene:snRNP-U1-70K / 33982 FlyBaseID:FBgn0016978 Length:448 Species:Drosophila melanogaster
Sequence 2:NP_956827.1 Gene:srsf10b / 393505 ZFINID:ZDB-GENE-040426-1415 Length:248 Species:Danio rerio


Alignment Length:258 Identity:73/258 - (28%)
Similarity:105/258 - (40%) Gaps:36/258 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 PFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHAD 164
            |..:||:..|:.::....|||||..||||..:.:..|..|.:|:|:|:|::|..||...|..:.|
Zfish     8 PNSSLFVRNISDESRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYIQFEDVRDAEDALHNLD 72

  Fly   165 GKKIDSKRVLVDVERARTVKGWLPRRLGGGLGGTRRGGNDVNIKHSGREDNERERERYRLERERE 229
            .|.:..:::.:...:.       .|:..|.:....|.        |.|.....:.:|.|..|.|.
Zfish    73 RKWVCGRQIEIQFAQG-------DRKTPGQMKNKERS--------SPRSSRYEDSDRRRRSRSRS 122

  Fly   230 -DREGPGRGGGSNGLDARPGRGFGAERRRSRSRERRDRERDRGRGAVASNGR------SRSRSRE 287
             ||    |...|...|.|..|.......|.|:..||.||.||.||:...:.|      |||||..
Zfish   123 YDR----RRSRSPSYDRRRRRSDSPRESRGRTHSRRSREHDRHRGSTRDHHRSRTDAASRSRSPS 183

  Fly   288 RRKRRAGSRERYDEFDRRDRRDRERERDRDREREKKK--------KRSKSRERESSRERRERK 342
            |.:.|.|.||  .:..|........:::......|..        .||.||.|..||....||
Zfish   184 RSRARGGRRE--SDGARSHTHSASPQQNHSTAENKHSAGDDTHIHTRSASRSRSRSRSWAGRK 244

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snRNP-U1-70KNP_477205.1 U1snRNP70_N 3..92 CDD:432406
RRM_snRNP70 101..188 CDD:409682 24/86 (28%)
srsf10bNP_956827.1 RRM_SRSF10 5..99 CDD:409975 27/97 (28%)
Blue background indicates that the domain is not in the aligned region.

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