Protein Alignment snRNP-U1-70K and tra2a

DIOPT Version :10

• Sequence 1: NP_477205.1
• Gene: snRNP-U1-70K / 33982
• FlyBaseID: FBgn0016978
• Length: 448
• Species: Drosophila melanogaster
• Sequence 2: NP_956710.1
• Gene: tra2a / 393388
• ZFINID: ZDB-GENE-040426-1391
• Length: 297
• Species: Danio rerio
• Alignment Length: 318
• Identity: 72/318 - (22%)
• Similarity: 110/318 - (34%)
• Gaps: 112/318 - (35%)

  Fly    30 HEKK--SRGYLGVAKFMADFEDPKDTPLPKTVETRQERL------ERRRREKAEQVAYKLEREIA 86
            |.||  ||.|                    :.|:|:.|.      ..||:....:.:|..:.:..
Zfish    76 HRKKSRSRSY--------------------SPESRRRRSRSASPNSNRRKHAGSRSSYSHDSKKD 120

  Fly    87 LWDPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYE 151
            ..:..:.: |..||...|.:..::..|:|..||..|..||.:..:.:::||.:|:.:|:||:.:|
Zfish   121 SHNQGDAR-ANPDPNTCLGVFGLSLYTTERDLREVFSRYGSLAGVNVVYDQRTGRSRGFAFVYFE 184

  Fly   152 HERDMHAAYKHADGKKIDSKRVLVD---VERARTVKGWL----PRRLGGGLGGTRRGGNDVNIKH 209
            |..|...|.:.|:|.::|.:|:.||   .:|..|....:    |...|||
Zfish   185 HIDDAKEAMERANGMELDGRRIRVDYSITKRPHTPTPGIYMGRPTHNGGG--------------- 234

  Fly   210 SGREDNERERERYRLEREREDREGPGRGGGSNGLDARPGRGFGAERRRSRSRERRDRERDRGRGA 274
                                     |.||||:.         |..||.|......||..|||
Zfish   235 -------------------------GGGGGSSS---------GGRRRDSYYDRGYDRGYDRG--- 262

  Fly   275 VASNGRSRSRSRERRKRRAGSRERYDEFDRRDRRDRERERDRDREREKKKKRSKSRER 332
                                    |||:|.|..|.|.......|.|.:.:.||.|..|
Zfish   263 ------------------------YDEYDYRYSRRRSPSPYYSRYRSRSRSRSYSPRR 296

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snRNP-U1-70K	NP_477205.1	U1snRNP70_N	3..92	CDD:432406	12/69 (17%)
		RRM_snRNP70	101..188	CDD:409682	26/93 (28%)
tra2a	NP_956710.1	RRM_TRA2	134..213	CDD:409798	24/78 (31%)