Protein Alignment snRNP-U1-70K and lark

DIOPT Version :10

• Sequence 1: NP_477205.1
• Gene: snRNP-U1-70K / 33982
• FlyBaseID: FBgn0016978
• Length: 448
• Species: Drosophila melanogaster
• Sequence 2: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Alignment Length: 398
• Identity: 75/398 - (18%)
• Similarity: 122/398 - (30%)
• Gaps: 150/398 - (37%)

  Fly    67 ERRRREKAEQV-AYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKK 130
            |::.|:..:.: .|.|.......:..:.:.|...|...:|:..:...|...::|..|:.||.:.:
  Fly    50 EQQGRDAIQNLNGYTLNEFAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVE 114

  Fly   131 IVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGGL 195
            ..::        :.|.|:..:...|:..|.|..:|:.:|.:.:.|.|..:|.       |...|:
  Fly   115 CDIV--------RNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRV-------RPKPGM 164

  Fly   196 GGTRRGGNDVNIKHSGREDNERERERYRLERERE-DREGP---GRGGGSNGLDARPGRGFGAERR 256
            |                 |.|   :.||..|... .:|.|   |..||  |.:.......|..|.
  Fly   165 G-----------------DPE---QCYRCGRSGHWSKECPRLYGSAGG--GREPPSPLSAGGYRD 207

  Fly   257 RSRSRE-----------RRDRERDRGRGAVASNGRSRSRSRERRKRRAGSRERYDEFDRRDRRDR 310
            |...|:           .|||..|                        |.|: ||.:|||
  Fly   208 RMYGRDPYPPPPPPPPFLRDRIMD------------------------GFRD-YDYYDRR----- 242

  Fly   311 ERERDRDREREKKKKRSKSRERESSRERRERKRERRDRERGTGSGGDVKERKPDFRDMDVIKIKE 375
                                 .|.||:..||:.:              ..|..||....:.:.:.
  Fly   243 ---------------------FEDSRDLYERRYQ--------------TSRMRDFPPPPISRREP 272

  Fly   376 EPVDDGYPTF--DYQNATIKREIDDEDEEKYRPPPAHHNMFS--VPPPPILGRGNASTNPNPDNG 436
            .|:.   ||.  ..::.::.|..|              .|||  .|||           |...||
  Fly   273 MPLP---PTLSGSLRSCSVSRGYD--------------TMFSRRSPPP-----------PRSSNG 309

  Fly   437 QQSSGDPS 444
            ....|.|:
  Fly   310 MSRYGSPT 317

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snRNP-U1-70K	NP_477205.1	U1snRNP70_N	3..92	CDD:432406	4/25 (16%)
		RRM_snRNP70	101..188	CDD:409682	16/86 (19%)
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	4/22 (18%)
		RRM1_2_CoAA_like	87..152	CDD:409779	13/72 (18%)
		hnRNP-R-Q	<88..>258	CDD:273732	50/271 (18%)