DRSC/TRiP Functional Genomics Resources

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Protein Alignment snRNP-U1-70K and cstf2

DIOPT Version :10

Sequence 1:NP_477205.1 Gene:snRNP-U1-70K / 33982 FlyBaseID:FBgn0016978 Length:448 Species:Drosophila melanogaster
Sequence 2:XP_009289373.1 Gene:cstf2 / 386806 ZFINID:ZDB-GENE-031118-2 Length:508 Species:Danio rerio


Alignment Length:104 Identity:32/104 - (30%)
Similarity:56/104 - (53%) Gaps:6/104 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 ATEDP-----FRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERD 155
            |..||     .|::|:..|.|:.:|.:|:..|...|.:....|::|:|:||||||.|.||:.:..
Zfish    13 AARDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQET 77

  Fly   156 MHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGG 194
            ..:|.::.:|::...:.:.||...:...|..| :.||.|
Zfish    78 ALSAMRNLNGREFSGRALRVDNAASEKNKEEL-KSLGTG 115

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snRNP-U1-70KNP_477205.1 U1snRNP70_N 3..92 CDD:432406
RRM_snRNP70 101..188 CDD:409682 25/86 (29%)
cstf2XP_009289373.1 RRM_CSTF2_CSTF2T 19..102 CDD:410072 24/82 (29%)
PABP-1234 <26..372 CDD:130689 28/91 (31%)
CSTF2_hinge 120..199 CDD:433869
CSTF_C 464..503 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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