DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment snRNP-U1-70K and cstf2

DIOPT Version :9

Sequence 1:	NP_001260173.1	Gene:	snRNP-U1-70K / 33982	FlyBaseID:	FBgn0016978	Length:	448	Species:	Drosophila melanogaster
Sequence 2:	XP_009289373.1	Gene:	cstf2 / 386806	ZFINID:	ZDB-GENE-031118-2	Length:	508	Species:	Danio rerio

Alignment Length:	104	Identity:	32/104 - (30%)
Similarity:	56/104 - (53%)	Gaps:	6/104 - (5%)

- Green bases have known domain annotations that are detailed below.

  Fly    96 ATEDP-----FRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERD 155
            |..||     .|::|:..|.|:.:|.:|:..|...|.:....|::|:|:||||||.|.||:.:..
Zfish    13 AARDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQET 77

  Fly   156 MHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGG 194
            ..:|.::.:|::...:.:.||...:...|..| :.||.|
Zfish    78 ALSAMRNLNGREFSGRALRVDNAASEKNKEEL-KSLGTG 115

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
snRNP-U1-70K	NP_001260173.1	U1snRNP70_N	2..92	CDD:289024
		RRM	<97..>179	CDD:223796	26/86 (30%)
		RRM_snRNP70	101..188	CDD:240682	25/86 (29%)
cstf2	XP_009289373.1	RRM	<24..>112	CDD:223796	26/88 (30%)
		RRM_CSTF2_CSTF2T	26..100	CDD:241115	23/73 (32%)
		CSTF2_hinge	121..199	CDD:291025
		CSTF_C	464..504	CDD:291002
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1455080at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	2	1.920