Protein Alignment snRNP-U1-70K and tra2

DIOPT Version :10

• Sequence 1: NP_477205.1
• Gene: snRNP-U1-70K / 33982
• FlyBaseID: FBgn0016978
• Length: 448
• Species: Drosophila melanogaster
• Sequence 2: NP_476764.1
• Gene: tra2 / 36619
• FlyBaseID: FBgn0003742
• Length: 264
• Species: Drosophila melanogaster
• Alignment Length: 258
• Identity: 69/258 - (26%)
• Similarity: 105/258 - (40%)
• Gaps: 66/258 - (25%)

  Fly    62 RQERLERRRREKAE--------QVAYKLEREIALWDPTEIKNATEDP--FRTLFIARINYDTSES 116
            |.:|...|||.::.        :..::..|...  |...:..:.|.|  .|.:.:..:|.:||:.
  Fly    49 RHQRSSSRRRSRSRSSSESPPPEPRHRSGRSSR--DRERMHKSREHPQASRCIGVFGLNTNTSQH 111

  Fly   117 KLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVD---VE 178
            |:|..|..||||::|.::.|.::.:.:|:.||.:|...|..||.....|.::|.:|:.||   .:
  Fly   112 KVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVDFSITQ 176

  Fly   179 RART----------VKGWLPRRLGGGLGGTRRGGNDVNIKHSGREDNERERERYRLEREREDREG 233
            ||.|          .:|..||..     ..|||....:.:.:...||.|:|..||  .:|.||
  Fly   177 RAHTPTPGVYLGRQPRGKAPRSF-----SPRRGRRVYHDRSASPYDNYRDRYDYR--NDRYDR-- 232

  Fly   234 PGRGGGSNGLDARPGRGFGAERRRSRSRERRDRERDRGRGAVASNGRSRSRSRERRKRRAGSR 296
                                ..|||.||.|..|            .||.||||..:.||..||
  Fly   233 --------------------NLRRSPSRNRYTR------------NRSYSRSRSPQLRRTSSR 263

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snRNP-U1-70K	NP_477205.1	U1snRNP70_N	3..92	CDD:432406	7/37 (19%)
		RRM_snRNP70	101..188	CDD:409682	29/99 (29%)
tra2	NP_476764.1	RRM_TRA2	96..175	CDD:409798	25/78 (32%)