Protein Alignment snRNP-U1-70K and Pabp2

DIOPT Version :10

• Sequence 1: NP_477205.1
• Gene: snRNP-U1-70K / 33982
• FlyBaseID: FBgn0016978
• Length: 448
• Species: Drosophila melanogaster
• Sequence 2: NP_476902.1
• Gene: Pabp2 / 35788
• FlyBaseID: FBgn0005648
• Length: 224
• Species: Drosophila melanogaster
• Alignment Length: 157
• Identity: 35/157 - (22%)
• Similarity: 68/157 - (43%)
• Gaps: 25/157 - (15%)

  Fly    54 PLPKTVETRQERLERRRREKAEQVAYKLEREIA-------LWDPTEIKNATEDPFRTLFIARINY 111
            |..:.::.|.:.:| ...||.:|:..::::::|       ...|..::...|...|::::..::|
  Fly    42 PELEAIKARVKEME-EEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDY 105

  Fly   112 DTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVD 176
            ..|..:|...|...|.|.::.::.::..|.|||:|:||:              |.|...:..|..
  Fly   106 GASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEF--------------GSKEFVETALAM 156

  Fly   177 VE---RARTVKGWLPRRLGGGLGGTRR 200
            .|   |.|.:|....|....||..|.|
  Fly   157 NETLFRGRQIKVMSKRTNRPGLSTTNR 183

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snRNP-U1-70K	NP_477205.1	U1snRNP70_N	3..92	CDD:432406	8/44 (18%)
		RRM_snRNP70	101..188	CDD:409682	21/89 (24%)
Pabp2	NP_476902.1	DNA_pol_phi	<3..68	CDD:461488	6/26 (23%)
		RRM_II_PABPN1	97..172	CDD:409966	20/88 (23%)