DRSC/TRiP Functional Genomics Resources

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Protein Alignment snRNP-U1-70K and Caper

DIOPT Version :10

Sequence 1:NP_477205.1 Gene:snRNP-U1-70K / 33982 FlyBaseID:FBgn0016978 Length:448 Species:Drosophila melanogaster
Sequence 2:NP_609095.1 Gene:Caper / 33989 FlyBaseID:FBgn0031883 Length:594 Species:Drosophila melanogaster


Alignment Length:226 Identity:71/226 - (31%)
Similarity:91/226 - (40%) Gaps:66/226 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   193 GGLGGTRR--------GGNDVNIKHSG-----------------------------REDNERERE 220
            ||.||.:|        ||:|.:...:|                             |.|...||.
  Fly    25 GGSGGRKRSGSSPGGGGGHDDDYAENGPRNGSGGGSSHKKQSKRSRSRSGSRDGKSRRDRGNERS 89

  Fly   221 RYRLEREREDREGPGRGGGSNGLDARPG--RGFGAERRRSRSRERRDRERD-RGRGAVASNGR-- 280
            .:|.:.:..||   .|.||......|.|  |....||.|.|.|.||.|.|| ||.|     ||  
  Fly    90 SHRDKDKERDR---NRDGGDRDRHRREGGDRDRERERERERDRSRRSRSRDERGGG-----GRYG 146

  Fly   281 SRSRSRERRKRRAGSRERYDEFDR-RDRRDRERERDRDRE-----REKKKKRSKSRERESSRERR 339
            .|.:.|..|.||.||:..  :.|| ||:|.|.|.||:.|:     ||:|:..|:||:|.|     
  Fly   147 DRDKDRRSRDRRGGSKSL--QVDRSRDKRRRSRSRDQQRKRLSPIRERKRSHSRSRDRNS----- 204

  Fly   340 ERKRERRDRERGTGSGGD---VKERKPDFRD 367
            .|:.....|.|...:|.|   ..|..|:.||
  Fly   205 RRRGTNSPRRRSPPNGADRTTPTELSPEERD 235

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snRNP-U1-70KNP_477205.1 U1snRNP70_N 3..92 CDD:432406
RRM_snRNP70 101..188 CDD:409682
CaperNP_609095.1 SF-CC1 213..578 CDD:273721 8/23 (35%)
Blue background indicates that the domain is not in the aligned region.

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