DRSC/TRiP Functional Genomics Resources

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Protein Alignment snRNP-U1-70K and srsf2b

DIOPT Version :10

Sequence 1:NP_477205.1 Gene:snRNP-U1-70K / 33982 FlyBaseID:FBgn0016978 Length:448 Species:Drosophila melanogaster
Sequence 2:NP_955945.2 Gene:srsf2b / 323700 ZFINID:ZDB-GENE-030131-2420 Length:220 Species:Danio rerio


Alignment Length:260 Identity:82/260 - (31%)
Similarity:107/260 - (41%) Gaps:57/260 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 DPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHA 163
            |...:|.:..:.|.||...|||.||.||.:..:.:..|:.:.:.:|:||:.:..:||...|....
Zfish    11 DGMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75

  Fly   164 DGKKIDSKRVLVDVERARTVKGWLPRRLGGGLGGTRRGGNDVNIKHSGREDNERERERYRLERER 228
            ||..:|.:.:.|.:.|    .|..|....||.||.|||.                          
Zfish    76 DGAILDGRELRVQMAR----YGRPPDSYYGGGGGGRRGS-------------------------- 110

  Fly   229 EDREGPGRGGGSNGLDARPGRGFGAERRRSRSRERRDRERDRGRGAVASNGRSRSRSRERRKR-R 292
                  |.||||        |..||.|.||..|.||.|.|.|.|      .|||||||..|.| |
Zfish   111 ------GGGGGS--------RRHGARRSRSPRRRRRSRSRSRSR------SRSRSRSRYSRSRSR 155

  Fly   293 AGSRERYDEFDRRDRRDRERERDRDREREKKKKRSKSRERESSRERRERKRERRDRERGTGSGGD 357
            :.||.|........|:.:...|.|.|.|.|.:.||:||...|:||.|.|.:.      ...|.||
Zfish   156 SYSRSRSKSHTPNKRKSKSPSRSRSRSRSKSRSRSRSRTPASNRESRSRSKS------APKSAGD 214

  Fly   358  357
            Zfish   215  214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snRNP-U1-70KNP_477205.1 U1snRNP70_N 3..92 CDD:432406
RRM_snRNP70 101..188 CDD:409682 24/86 (28%)
srsf2bNP_955945.2 RRM_SRSF2_SRSF8 16..88 CDD:409751 21/71 (30%)
Blue background indicates that the domain is not in the aligned region.

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