DRSC/TRiP Functional Genomics Resources

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Protein Alignment snRNP-U1-70K and tia1l

DIOPT Version :10

Sequence 1:NP_477205.1 Gene:snRNP-U1-70K / 33982 FlyBaseID:FBgn0016978 Length:448 Species:Drosophila melanogaster
Sequence 2:NP_956476.1 Gene:tia1l / 323447 ZFINID:ZDB-GENE-030131-2167 Length:342 Species:Danio rerio


Alignment Length:79 Identity:25/79 - (31%)
Similarity:40/79 - (50%) Gaps:2/79 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 EDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKH 162
            ||..|||::..::.|.:|:.:.:.|...||.|...:|.|.....|  |.|:|:...|...||...
Zfish     5 EDQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDP--YCFVEFYENRHAAAALAA 67

  Fly   163 ADGKKIDSKRVLVD 176
            .:|:||..|.:.|:
Zfish    68 MNGRKILGKDMKVN 81

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snRNP-U1-70KNP_477205.1 U1snRNP70_N 3..92 CDD:432406
RRM_snRNP70 101..188 CDD:409682 23/76 (30%)
tia1lNP_956476.1 RRM_SF 10..83 CDD:473069 22/74 (30%)
RRM2_TIA1_like 98..172 CDD:409789
RRM3_TIAR 206..278 CDD:241064
Blue background indicates that the domain is not in the aligned region.

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