Protein Alignment snRNP-U1-70K and Tia1

DIOPT Version :9

• Sequence 1: NP_001260173.1
• Gene: snRNP-U1-70K / 33982
• FlyBaseID: FBgn0016978
• Length: 448
• Species: Drosophila melanogaster
• Sequence 2: XP_006236890.1
• Gene: Tia1 / 312510
• RGDID: 1305742
• Length: 387
• Species: Rattus norvegicus
• Alignment Length: 75
• Identity: 24/75 - (32%)
• Similarity: 40/75 - (53%)
• Gaps: 1/75 - (1%)

  Fly   102 RTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGK 166
            :||::..::.|.:|:.:.:.|...||.|...:|.||.:|... |.|:|:...|...||....:|:
  Rat     7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDQTAGNDP-YCFVEFHEHRHAAAALAAMNGR 70

  Fly   167 KIDSKRVLVD 176
            ||..|.|.|:
  Rat    71 KIMGKEVKVN 80

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snRNP-U1-70K	NP_001260173.1	U1snRNP70_N	2..92	CDD:289024
		RRM	<97..>179	CDD:223796	24/75 (32%)
		RRM_snRNP70	101..188	CDD:240682	24/75 (32%)
Tia1	XP_006236890.1	ELAV_HUD_SF	6..281	CDD:273741	24/75 (32%)
		RRM_SF	8..82	CDD:302621	24/74 (32%)
		RRM2_TIA1	106..185	CDD:241062
		RRM3_TIAR	215..287	CDD:241064

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910