DRSC/TRiP Functional Genomics Resources

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Protein Alignment snRNP-U1-70K and Cstf2t

DIOPT Version :10

Sequence 1:NP_477205.1 Gene:snRNP-U1-70K / 33982 FlyBaseID:FBgn0016978 Length:448 Species:Drosophila melanogaster
Sequence 2:NP_001101056.1 Gene:Cstf2t / 309338 RGDID:1310026 Length:629 Species:Rattus norvegicus


Alignment Length:92 Identity:28/92 - (30%)
Similarity:53/92 - (57%) Gaps:5/92 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 IALWDPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIE 149
            :|:.||     |.:...|::|:..|.|:.:|.:|:..|...|.:....|::|:|:||||||.|.|
  Rat     4 LAVRDP-----AMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCE 63

  Fly   150 YEHERDMHAAYKHADGKKIDSKRVLVD 176
            |:.:....:|.::.:|::...:.:.||
  Rat    64 YQDQETALSAMRNLNGREFSGRALRVD 90

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snRNP-U1-70KNP_477205.1 U1snRNP70_N 3..92 CDD:432406 3/6 (50%)
RRM_snRNP70 101..188 CDD:409682 24/76 (32%)
Cstf2tNP_001101056.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 25/81 (31%)
CSTF2_hinge 112..191 CDD:433869
CSTF_C 585..625 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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