DRSC/TRiP Functional Genomics Resources

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Protein Alignment snRNP-U1-70K and Rbmx

DIOPT Version :10

Sequence 1:NP_477205.1 Gene:snRNP-U1-70K / 33982 FlyBaseID:FBgn0016978 Length:448 Species:Drosophila melanogaster
Sequence 2:NP_001020834.1 Gene:Rbmx / 302855 RGDID:1565256 Length:390 Species:Rattus norvegicus


Alignment Length:407 Identity:103/407 - (25%)
Similarity:146/407 - (35%) Gaps:99/407 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 LFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKI 168
            |||..:|.:|:|..|...|..||.|.:::|:.|:|:.|.:|:||:.:|...|...|.:..:||.:
  Rat    10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSL 74

  Fly   169 DSKRVLVD----------------VERARTVKGWLPRRLGGGLGGTRRGGNDVNIKHSGREDNER 217
            |.|.:.|:                ..|:|..    ||.|.||.||:  ||........|..|:..
  Rat    75 DGKAIKVEQATKPSFESGRRGLPPPPRSRGP----PRGLRGGRGGS--GGTRGPPSRGGHMDDGG 133

  Fly   218 ERERYRLERER----EDREGPGRGGG--------------SNGLDARP----GR-GFGAERRRSR 259
            ....:.|...|    ..|..|.|.||              |:|:..|.    || |:|...||..
  Rat   134 YSMNFTLSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPVSRGRDGYGGPPRREP 198

  Fly   260 SRERRD---RERDRGRGAVAS-NGRSRSRSRERRK----------RRAGSRERYDEFDRRDRRDR 310
            ...|||   ..||.|.....| :.|....||:.|.          |..|.....|::..|...||
  Rat   199 LPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDR 263

  Fly   311 E---RERDRDRE------REKKKKRSKSRERESSR---------ERRERKRERRDRERGTGSGGD 357
            :   ||||....      |:..:....||....:|         .|.:.....||     |.||.
  Rat   264 DGYGRERDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDYSSSRD-----GYGGS 323

  Fly   358 VKERKPDFRDMDVIKIKEEPVDDGYPTFDYQNATIKREIDDEDEEKYRPPPAHHNMFSVPPPPIL 422
                    || .....:.:....|......|    :|.:....|..|.||...::..|...|...
  Rat   324 --------RD-SYTSSRSDLYSSGRDRVGRQ----ERGLPPSMERGYPPPRDSYSSSSRGAPRGG 375

  Fly   423 GRGNASTNPNPDNGQQS 439
            |||.:.:    |.|.:|
  Rat   376 GRGGSRS----DRGGRS 388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snRNP-U1-70KNP_477205.1 U1snRNP70_N 3..92 CDD:432406
RRM_snRNP70 101..188 CDD:409682 28/99 (28%)
RbmxNP_001020834.1 RRM_RBMX_like 7..86 CDD:409816 26/75 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 58..390 84/359 (23%)
dnaA 165..>302 CDD:455861 34/136 (25%)
RBM1CTR 173..217 CDD:400429 15/43 (35%)
Blue background indicates that the domain is not in the aligned region.

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