DRSC/TRiP Functional Genomics Resources

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Protein Alignment snRNP-U1-70K and RBMX

DIOPT Version :10

Sequence 1:NP_477205.1 Gene:snRNP-U1-70K / 33982 FlyBaseID:FBgn0016978 Length:448 Species:Drosophila melanogaster
Sequence 2:NP_002130.2 Gene:RBMX / 27316 HGNCID:9910 Length:391 Species:Homo sapiens


Alignment Length:375 Identity:90/375 - (24%)
Similarity:124/375 - (33%) Gaps:117/375 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 LFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKI 168
            |||..:|.:|:|..|...|..||.|.:::|:.|:|:.|.:|:||:.:|...|...|.:..:||.:
Human    10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSL 74

  Fly   169 DSKRVLVD------VERARTVKGWLPRRLG---------GGLGGTR----RGGN--------DVN 206
            |.|.:.|:      .|..|......||..|         ||.||||    |||:        :.|
Human    75 DGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMDDGGYSMNFN 139

  Fly   207 IKHS-----------------------------------GREDNERERERY----RLE------- 225
            :..|                                   ||....|.|:.|    |.|       
Human   140 MSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPVSRGRDSYGGPPRREPLPSRRD 204

  Fly   226 ------------------------REREDREGPGRG------GGSNGLDARPGRGFGAERRRSRS 260
                                    |:..|...|.|.      |.|:..|..|.||:.......|.
Human   205 VYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGRD 269

  Fly   261 RERRDRERDRG-RGAVASNGRSRSRSRERRKRRA-GSRERYDEFD--------RRDRRDRER--- 312
            |:..|...... |.:..|.|.|||....|....: |...|||::.        .||.....|   
Human   270 RDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDL 334

  Fly   313 -ERDRDREREKKKKRSKSRERESSRERRERKRERRDRERGTGSGGDVKER 361
             ...|||...:::....|.||.....|.......|...||.|.||...:|
Human   335 YSSGRDRVGRQERGLPPSMERGYPPPRDSYSSSSRGAPRGGGRGGSRSDR 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snRNP-U1-70KNP_477205.1 U1snRNP70_N 3..92 CDD:432406
RRM_snRNP70 101..188 CDD:409682 28/89 (31%)
RBMXNP_002130.2 RRM_RBMX_like 7..86 CDD:409816 26/75 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 61..391 71/324 (22%)
dnaA 165..>306 CDD:455861 27/140 (19%)
RBM1CTR 173..217 CDD:400429 7/43 (16%)
Necessary for the association to nascent RNAPII transcripts and nuclear localization 186..236 6/49 (12%)
Necessary for RNA-binding 333..391 14/52 (27%)
Blue background indicates that the domain is not in the aligned region.

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