DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment snRNP-U1-70K and tif307

DIOPT Version :10

Sequence 1:NP_477205.1 Gene:snRNP-U1-70K / 33982 FlyBaseID:FBgn0016978 Length:448 Species:Drosophila melanogaster
Sequence 2:NP_595727.1 Gene:tif307 / 2540819 PomBaseID:SPBC18H10.03 Length:282 Species:Schizosaccharomyces pombe


Alignment Length:153 Identity:39/153 - (25%)
Similarity:61/153 - (39%) Gaps:57/153 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 PPVDKLPHEKKSRGYLGVAKFMADFEDPKDTPLPKTVETRQERLERRR-----------REKAEQ 76
            ||:|..|...::.|.||                           |:.|           ||..:.
pombe   155 PPLDASPVSSRASGALG---------------------------EKGRYIAPHLRAGSGRESGDS 192

  Fly    77 VAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGK 141
            : :|.||               |...||.:..::.||.|.:||..|..:|.|:::.|..|:|:|:
pombe   193 M-FKRER---------------DDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGR 241

  Fly   142 PKGYAFIEYEHERDMHAAYKHAD 164
            .||:||:.| ::||  .|.|..|
pombe   242 AKGFAFVSY-YDRD--CAIKARD 261

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snRNP-U1-70KNP_477205.1 U1snRNP70_N 3..92 CDD:432406 14/79 (18%)
RRM_snRNP70 101..188 CDD:409682 24/64 (38%)
tif307NP_595727.1 eIF3g 21..148 CDD:463545
RRM_eIF3G_like 203..278 CDD:409842 24/62 (39%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.