DRSC/TRiP Functional Genomics Resources

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Protein Alignment snRNP-U1-70K and Rbmxl1

DIOPT Version :10

Sequence 1:NP_477205.1 Gene:snRNP-U1-70K / 33982 FlyBaseID:FBgn0016978 Length:448 Species:Drosophila melanogaster
Sequence 2:NP_033059.2 Gene:Rbmxl1 / 19656 MGIID:1343045 Length:388 Species:Mus musculus


Alignment Length:376 Identity:90/376 - (23%)
Similarity:122/376 - (32%) Gaps:122/376 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 LFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKI 168
            |||..:|.:|:|..|...|..||.|.:|:|:.|:|:.|.:|:||:.:|...|...|.:..:||.:
Mouse    10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSL 74

  Fly   169 DSKRVLVD----------------VERARTVKGWLPRRLGGGLGGTR----------RGGNDVNI 207
            |.|.:.|:                ..|:|..    ||.|.||.||||          .||..:|.
Mouse    75 DGKAIKVEQATKPSFESGRRGPPPPPRSRGP----PRGLRGGSGGTRGPPSRGGYMDDGGYSMNF 135

  Fly   208 KHS-------------------------------------GREDNERERERY----RLE------ 225
            ..|                                     ||....|.|:.|    |.|      
Mouse   136 NMSSSRGPLPVKRGPPPRSGGPPPKRSTPSGPVRSSSGMGGRTPVSRGRDSYGGPPRREPLPSRR 200

  Fly   226 -------------------------REREDREGPGRG------GGSNGLDARPGRGFGAERRRSR 259
                                     |:..|...|.|.      ..|:..|..|.||:|......|
Mouse   201 DVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYSHSSSRDDYPSRGYGDRDGYGR 265

  Fly   260 SRERRDRERDRG-RGAVASNGRSRSRSRERRKRRA-GSRERYDEFD--------RRDRRDRER-- 312
            .|:..|...... |.:..|.|.|||....|....: |...|||::.        .||.....|  
Mouse   266 DRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSD 330

  Fly   313 --ERDRDREREKKKKRSKSRERESSRERRERKRERRDRERGTGSGGDVKER 361
              ...|||...:::....|.||.....|.......|...||.|.||...:|
Mouse   331 LYSSGRDRVGRQERGLPPSMERGYPPPRDSYSSSSRGAPRGGGRGGSRSDR 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snRNP-U1-70KNP_477205.1 U1snRNP70_N 3..92 CDD:432406
RRM_snRNP70 101..188 CDD:409682 29/99 (29%)
Rbmxl1NP_033059.2 RRM_RBMX_like 7..86 CDD:409816 27/75 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 59..388 70/327 (21%)
RBM1CTR 170..214 CDD:400429 7/43 (16%)
Blue background indicates that the domain is not in the aligned region.

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