Protein Alignment snRNP-U1-70K and rnp-7

DIOPT Version :9

• Sequence 1: NP_001260173.1
• Gene: snRNP-U1-70K / 33982
• FlyBaseID: FBgn0016978
• Length: 448
• Species: Drosophila melanogaster
• Sequence 2: NP_498565.2
• Gene: rnp-7 / 176002
• WormBaseID: WBGene00004390
• Length: 332
• Species: Caenorhabditis elegans
• Alignment Length: 326
• Identity: 153/326 - (46%)
• Similarity: 187/326 - (57%)
• Gaps: 54/326 - (16%)

  Fly     1 MTQYLPPNLLALFAAREPIPFMPPVDKLPHEK--KSRGYLGVAKFMADFEDPKDTPLPKTVETRQ 63
            ||.:|||||||||.||.|:.::||...|..:|  |.....|||:::..||||||||....|.|:.
 Worm     1 MTAFLPPNLLALFEARPPVQYLPPCQDLLVDKNAKRAPMTGVAQYIQLFEDPKDTPAKIPVVTKA 65

  Fly    64 ERLERRRREKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPI 128
            |..|.:||:|.|.:|||:|:.||.|:|.|...|:|||:||||:.||||:|||||||||||.||.|
 Worm    66 EAKEEKRRQKDELLAYKVEQGIATWNPAENPRASEDPYRTLFVGRINYETSESKLRREFEAYGKI 130

  Fly   129 KKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGG 193
            ||:.::|| |:|||:|||||||..:.:||.|||.|||.|:|.||::||.||.||.|.||||||||
 Worm   131 KKLTMVHD-EAGKPRGYAFIEYSDKAEMHTAYKKADGIKVDGKRLVVDYERGRTQKTWLPRRLGG 194

  Fly   194 GLGGTRR-----------------GGNDVNIKHSGREDNERERERYRLEREREDREGPGRGGGSN 241
            |.|.||:                 ||        |.||.:|||     ...|:.|:...|.||.|
 Worm   195 GKGDTRKTREAKSVIEEREIASGFGG--------GYEDRDRER-----SGSRDRRQDSYRNGGGN 246

  Fly   242 GLDARP-----------GRGFGAERRRSRSRERRDRERDRGRGAVASNGRSRSRSRERRKRRAGS 295
            ..|.|.           |.|||.        ..|||..||..|  ...|..|.|..:|...|.||
 Worm   247 DRDRRESSGGFRDNRGGGGGFGG--------GGRDRFNDRSGG--GGYGGDRDRGGDRGGDRGGS 301

  Fly   296 R 296
            |
 Worm   302 R 302

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snRNP-U1-70K	NP_001260173.1	U1snRNP70_N	2..92	CDD:289024	45/91 (49%)
		RRM	<97..>179	CDD:223796	54/81 (67%)
		RRM_snRNP70	101..188	CDD:240682	57/86 (66%)
rnp-7	NP_498565.2	U1snRNP70_N	4..94	CDD:371969	44/89 (49%)
		RRM_snRNP70	103..192	CDD:240682	60/89 (67%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C160166409
Domainoid	1	1.000	103	1.000	Domainoid score	I4287
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	259	1.000	Inparanoid score	I1922
Isobase	1	0.950	-	0	Normalized mean entropy	S1470
OMA	1	1.010	-	-		QHG54339
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0005136
OrthoInspector	1	1.000	-	-		oto18223
orthoMCL	1	0.900	-	-		OOG6_102349
Panther	1	1.100	-	-	LDO	PTHR13952
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R1267
SonicParanoid	1	1.000	-	-		X3654
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	13	12.880