Protein Alignment snRNP-U1-70K and rsp-1

DIOPT Version :10

• Sequence 1: NP_477205.1
• Gene: snRNP-U1-70K / 33982
• FlyBaseID: FBgn0016978
• Length: 448
• Species: Drosophila melanogaster
• Sequence 2: NP_496442.1
• Gene: rsp-1 / 174748
• WormBaseID: WBGene00004698
• Length: 312
• Species: Caenorhabditis elegans
• Alignment Length: 337
• Identity: 89/337 - (26%)
• Similarity: 123/337 - (36%)
• Gaps: 115/337 - (34%)

  Fly   104 LFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKI 168
            ::|.|:....||..:...|..||.|:.::|        ..|:.|:|::.:||...|....:||::
 Worm     5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLL--------KNGFGFVEFDDKRDAEDAVHDLNGKEL 61

  Fly   169 DSKRVLVDVERARTVKGWLPRRLG---GGLGGTRRGGNDVNIKHSGREDNERER-ERY-RLERER 228
            ..:||::|..:        ||..|   ||.||..|||..|: .:||.....|:| :|| |....|
 Worm    62 GGERVILDYSK--------PRGGGGDRGGFGGGGRGGARVS-SYSGGGGGGRDRFDRYDRGPPRR 117

  Fly   229 EDREG------------------------------------------PGR--------------- 236
            |.|.|                                          |..
 Worm   118 ESRYGRPYSTRHRVVVENLSSRISWQDLKDQVRRQGVEPTYAEAHKRPNEALLCFATPSDLKRCI 182

  Fly   237 ----GGGSNGL------DARPGRGFGAERRRSRSRER-RDRERDRGRGAVASNGRSRSRSRERRK 290
                |...||.      |::.||.......|||||.| |||.|.|.|    |:.||:||||...|
 Worm   183 EKCDGMDLNGRKIKMIDDSQAGRSRSRSNSRSRSRSRSRDRRRSRSR----SSSRSKSRSRSPPK 243

  Fly   291 RRAGSRERYDEFDRRDRRDRERERDRDREREKKKKRSKSRERE----------SSRERRERKRER 345
            |           .||:.:.:.|.|.|.|..:.:|.||.||..:          .||...|:...|
 Worm   244 R-----------SRRESKSKSRSRSRSRSADNRKSRSPSRSPKKVDRSPSPPRGSRSPSEKGSPR 297

  Fly   346 RDRERGTGSGGD 357
            |.|.......||
 Worm   298 RSRSASPMDNGD 309

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snRNP-U1-70K	NP_477205.1	U1snRNP70_N	3..92	CDD:432406
		RRM_snRNP70	101..188	CDD:409682	20/83 (24%)
rsp-1	NP_496442.1	RRM1_SRSF4_like	4..73	CDD:409774	20/83 (24%)
		RRM2_SRSF1_4_like	129..198	CDD:409776	4/68 (6%)