Protein Alignment snRNP-U1-70K and Hnrnpab

DIOPT Version :10

• Sequence 1: NP_477205.1
• Gene: snRNP-U1-70K / 33982
• FlyBaseID: FBgn0016978
• Length: 448
• Species: Drosophila melanogaster
• Sequence 2: NP_001041526.1
• Gene: Hnrnpab / 15384
• MGIID: 1330294
• Length: 332
• Species: Mus musculus
• Alignment Length: 279
• Identity: 62/279 - (22%)
• Similarity: 109/279 - (39%)
• Gaps: 61/279 - (21%)

  Fly    29 PHEKKSRGYLGVAKFMADFEDPKD-TPLPKTVETRQERLERRRREKAEQVAYKLEREIALWDPTE 92
            |:..:|||: |...|       || :.:.|.::.::.||:.|                 :.||.:
Mouse   110 PNTGRSRGF-GFILF-------KDSSSVEKVLDQKEHRLDGR-----------------VIDPKK 149

  Fly    93 IKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHE---- 153
            .....:||.:.:|:..:|.:.:|.|:|..|..:|.|:.|.|..|.:..|.:|:.||.::.|
Mouse   150 AMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVK 214

  Fly   154 RDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGGLGGTRRGGNDVNIKHSGREDNERE 218
            :.:...:....|.|.:.|     |.:.:.|  :..::.|.|..|.|..||    :.||...::..
Mouse   215 KVLEKKFHTVSGSKCEIK-----VAQPKEV--YQQQQYGSGGRGNRNRGN----RGSGGGQSQSW 268

  Fly   219 RERYRLEREREDREGPGRGGGSNGLDARPGRGFGAERRRSRSRERRDRERDRGRGAVASNGRSRS 283
            .:.|.....:......|.|.|..|.|..|...:|                 .|.|...|.|   |
Mouse   269 NQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYG-----------------YGPGYDYSQG---S 313

  Fly   284 RSRERRKRRAGSRERYDEF 302
            .:..:.:||.|.:..|..:
Mouse   314 TNYGKSQRRGGHQNNYKPY 332

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snRNP-U1-70K	NP_477205.1	U1snRNP70_N	3..92	CDD:432406	14/63 (22%)
		RRM_snRNP70	101..188	CDD:409682	21/90 (23%)
Hnrnpab	NP_001041526.1	CBFNT	1..75	CDD:311868
		RRM1_hnRNPAB	71..150	CDD:410151	14/64 (22%)
		RRM2_hnRNPAB	155..234	CDD:409997	21/83 (25%)