DRSC/TRiP Functional Genomics Resources

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Protein Alignment snRNP-U1-70K and LOC1270267

DIOPT Version :10

Sequence 1:NP_477205.1 Gene:snRNP-U1-70K / 33982 FlyBaseID:FBgn0016978 Length:448 Species:Drosophila melanogaster
Sequence 2:XP_308949.5 Gene:LOC1270267 / 1270267 VectorBaseID:AGAMI1_007420 Length:271 Species:Anopheles gambiae


Alignment Length:218 Identity:45/218 - (20%)
Similarity:75/218 - (34%) Gaps:71/218 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 LFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKI 168
            |.:..::..|:|::|...|..:||::|..::.|.::|:.:|:.|:.:|...|...|:..|:|.:|
Mosquito    98 LAVFNLSVYTTEAELYDTFSKFGPLRKTTVVLDAKTGRSRGFGFVYFESAEDAKVAHDQANGIEI 162

  Fly   169 DSKRVLVDVERARTVKGWLPRRLGGGLGGTRRGGNDVNIKHSGREDNERERERYRLEREREDREG 233
            ..:|:.||...........|                                             
Mosquito   163 GDRRIRVDFSATNKPHDPTP--------------------------------------------- 182

  Fly   234 PGRGGGSNGLDARPGRGFGAERRRSRSRERRDRERDRGRGAVASNG-------RSRSRSRERRKR 291
                |...|..:.|..|:|..               ...|..:|:|       ...:|.|||.:|
Mosquito   183 ----GVYYGKVSHPKTGYGGH---------------SSHGMASSHGYHHCRACEVEARERERWER 228

  Fly   292 RAGSRERYDEFDRRDRRDRERER 314
            .|.|||.|..:|.....||.|.|
Mosquito   229 DARSREHYYYYDSYSGHDRSRNR 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snRNP-U1-70KNP_477205.1 U1snRNP70_N 3..92 CDD:432406
RRM_snRNP70 101..188 CDD:409682 21/83 (25%)
LOC1270267XP_308949.5 None
Blue background indicates that the domain is not in the aligned region.

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