DRSC/TRiP Functional Genomics Resources

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Protein Alignment snRNP-U1-70K and cstf2

DIOPT Version :10

Sequence 1:NP_477205.1 Gene:snRNP-U1-70K / 33982 FlyBaseID:FBgn0016978 Length:448 Species:Drosophila melanogaster
Sequence 2:XP_012823534.1 Gene:cstf2 / 100170457 XenbaseID:XB-GENE-979047 Length:522 Species:Xenopus tropicalis


Alignment Length:106 Identity:33/106 - (31%)
Similarity:58/106 - (54%) Gaps:6/106 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 DPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHE 153
            ||     |.:...|::|:..|.|:.:|.:|:..|...||:....|::|:|:||||||.|.||:.:
 Frog     8 DP-----AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67

  Fly   154 RDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGG 194
            ....:|.::.:|::...:.:.||...:...|..| :.||.|
 Frog    68 ETALSAMRNLNGREFSGRALRVDNAASEKNKEEL-KSLGTG 107

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snRNP-U1-70KNP_477205.1 U1snRNP70_N 3..92 CDD:432406 2/2 (100%)
RRM_snRNP70 101..188 CDD:409682 26/86 (30%)
cstf2XP_012823534.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 26/83 (31%)
CSTF2_hinge 112..191 CDD:433869
PAT1 118..>299 CDD:401645
PRK07764 <207..409 CDD:236090
CSTF_C 478..518 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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