DRSC/TRiP Functional Genomics Resources

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Protein Alignment snRNP-U1-70K and hnrnpa3

DIOPT Version :10

Sequence 1:NP_477205.1 Gene:snRNP-U1-70K / 33982 FlyBaseID:FBgn0016978 Length:448 Species:Drosophila melanogaster
Sequence 2:XP_031748359.1 Gene:hnrnpa3 / 100144993 XenbaseID:XB-GENE-5878765 Length:385 Species:Xenopus tropicalis


Alignment Length:233 Identity:58/233 - (24%)
Similarity:92/233 - (39%) Gaps:47/233 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 PHEKKSRGYLGVAKFMADFEDPKDTPLPKTVETRQERLER--RRREKAEQVAYKLEREIALWDPT 91
            |..|:|||:..|.....:..|...:..|..|:.|....:|  .|.:.|...|:...::|      
 Frog   128 PQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKI------ 186

  Fly    92 EIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEH---- 152
                         |:..|..||.|..||..|:.||.|:.|.::.|::|||.:|:||:.::.    
 Frog   187 -------------FVGGIKEDTEEYHLRDYFQSYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 238

  Fly   153 ERDMHAAYKHADGKKIDSKRVL--VDVERARTVKGWLPRRLGGGLGGTRRGGNDVNIKHSGREDN 215
            ::.:...|...:|...:.|:.|  .:::.|...:|   ...|||.|...||       :.|....
 Frog   239 DKIVVQKYHTINGHNCEVKKALSKQEMQTASAQRG---GNYGGGPGYGGRG-------YGGSPGY 293

  Fly   216 ERERERYRLEREREDREGPGRGGGSNGLDA-RPGRGFG 252
            ..:...|         .|.|.|||..|.|. ..|..||
 Frog   294 GNQGGGY---------GGGGSGGGGGGYDGYNEGGNFG 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snRNP-U1-70KNP_477205.1 U1snRNP70_N 3..92 CDD:432406 15/64 (23%)
RRM_snRNP70 101..188 CDD:409682 25/92 (27%)
hnrnpa3XP_031748359.1 RRM1_hnRNPA_like 94..171 CDD:409992 11/42 (26%)
RRM2_hnRNPA3 184..263 CDD:409996 24/97 (25%)
HnRNPA1 328..>344 CDD:463312
Blue background indicates that the domain is not in the aligned region.

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