DRSC/TRiP Functional Genomics Resources

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Protein Alignment smt3 and Rad60

DIOPT Version :9

Sequence 1:NP_001303312.1 Gene:smt3 / 33981 FlyBaseID:FBgn0264922 Length:90 Species:Drosophila melanogaster
Sequence 2:NP_001262867.1 Gene:Rad60 / 42748 FlyBaseID:FBgn0039065 Length:424 Species:Drosophila melanogaster


Alignment Length:76 Identity:19/76 - (25%)
Similarity:34/76 - (44%) Gaps:25/76 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 QFKIK------KH---TPLRKLMN-----------AYCDRAGLSMQVVRFRFDGQPINENDTPTS 70
            :|::|      ||   .|::|..|           ..||     .:.::..|||..::.||||.:
  Fly   350 KFQVKVQADKWKHPLVIPMKKTDNFKIIFIKCAEELNCD-----PRTIKLFFDGDLLDPNDTPNN 409

  Fly    71 LEMEEGDTIEV 81
            .:||..:.|::
  Fly   410 QDMEGNEVIDL 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smt3NP_001303312.1 Ubl_SUMO2_3_4 12..83 CDD:340532 19/76 (25%)
Rad60NP_001262867.1 UBQ <392..422 CDD:294102 10/29 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5227
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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