DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmgcl and LEU4

DIOPT Version :9

Sequence 1:NP_001285696.1 Gene:Hmgcl / 33978 FlyBaseID:FBgn0031877 Length:323 Species:Drosophila melanogaster
Sequence 2:NP_014295.1 Gene:LEU4 / 855619 SGDID:S000005048 Length:619 Species:Saccharomyces cerevisiae


Alignment Length:305 Identity:57/305 - (18%)
Similarity:98/305 - (32%) Gaps:78/305 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 RDGLQNEPKLLPAATKIELINQLSETGLRTIEA-------TSF-------------VSAKWVPQM 78
            |||.|:.|..:....|.|..::|...|.:.||.       |.|             ||.:.:.|.
Yeast    69 RDGNQSLPDPMSVEQKKEYFHKLVNIGFKEIEVSFPSASQTDFDFTRYAVENAPDDVSIQCLVQS 133

  Fly    79 GDN-----AEVLKGIRKVTGISYPVLTPNLKGFESALEAGAEEVAVFGAASDAFSLKNVNCTAAE 138
            .::     .|.|.|.:|.|                        :..:.|.||.|.....|.:..|
Yeast   134 REHLIKRTVEALTGAKKAT------------------------IHTYLATSDMFREIVFNMSREE 174

  Fly   139 AIERFKPVLKAAQK--------------HGVRVRGYVSTVVGCPYEGAVAPSAVVKVVEALYQMG 189
            ||.:.....|..:|              :......:..|    |.|.||.....||......:..
Yeast   175 AISKAVEATKLVRKLTKDDPSQQATRWSYEFSPECFSDT----PGEFAVEICEAVKKAWEPTEEN 235

  Fly   190 CYEISLGDTIGVGTPGTMRRMLDEVTKVVPAKD---LAVHCHDTYGQALSNILVSLDYGIRVVDS 251
            ....:|..|:.|.:|......::.....:..::   ::.|||:..|..::...:.:..|...|: 
Yeast   236 PIIFNLPATVEVASPNVYADQIEYFATHITEREKVCISTHCHNDRGCGVAATELGMLAGADRVE- 299

  Fly   252 SVSGLGGCPYAKG-ASGNAATEDVVYLLHGMGLDTGVNLDKLIQV 295
                  ||.:..| .:||.....|...::..|:...::...|..|
Yeast   300 ------GCLFGNGERTGNVDLVTVAMNMYTQGVSPNLDFSDLTSV 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgclNP_001285696.1 HMGL-like 25..299 CDD:279072 57/305 (19%)
DRE_TIM_HMGL 28..300 CDD:163676 57/305 (19%)
LEU4NP_014295.1 leuA_yeast 35..596 CDD:273371 57/305 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157343033
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0119
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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